barSeed - Barley Seed Development Database

Probe CUST_37041_PI390587928

Source Contig U35_7156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37041_PI390587928	Hv_44K_v2	TGATTGGGATTGGGATGCATACATGATTCAGGATTGAATATTGTGAGTGAAGATTTATAC	627	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36604.1	1273	7e-23	1 - 57	100	57 / 57	minus	ABC14346
JLOC1	JLOC1_23589.1	1224	8e-25	1153 - 1212	100	60 / 60	plus
Harvest21	ABC14346	716	3e-25	628 - 687	100	60 / 60	plus	ABC14346
Harvest35	U35_7156	716	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_7156 716 Hv_44K_v2
GAACAGAAGGCACAGACCGAAATCGGCCAGGAGGTTGAAATGGAGGATTTGCCCATTCAA
CAGGAGAACGAGTCATTCTTGCAAGTCTGCGCGCGCCTTTTCCCCAGCAAGCAGGGCTCC
GCTTTCAGGGGTCGCCATTCTCTGTTCCGTCAGCAGCGCCGTGTGGTGGCATCAAAGGAG
AGCCCCCTGCACGCCGCCCTGACAGCGATAATGAAACGGTAGGAAAGAAATTCCATGCGC
GGTTTCTTTCTTGTGAGAGAAGCAGCTCCATGCCGCGCAGCTGCGTCGCGACTTTGGGAA
ACCTCTTCCCTGAAGACATGGGAAGCTGGTTGGAATAACGCTGATGTGGTGATGCTCGGG
TATGATGTGGGTACAAAATTAGTTGGAGGATACCTGTCGAGGAAGAATTCTCTTGGGCGT
AGACTTGAATTTTGTATGCGATAATCACATGTCGTCAGTGTCTCTCATTGCTTGCCGGCC
TGGCATAGGGTTGTCCTCAAGGCTATAATTCATTTCATTTCATTCCCAAGGGAGGGAGGG
CTATTAAACTAGTGTTTTGTGCCGATTCTTCCGGCCAACTAGTGCCTGACTCTTGAGCTT
GCCTAAAACAAAAAACAAAAGGTGTTTTGATTGGGATTGGGATGCATACATGATTCAGGA
TTGAATATTGTGAGTGAAGATTTATACATACATTCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None