barSeed - Barley Seed Development Database

Probe CUST_37040_PI390587928

Source Contig U35_7157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37040_PI390587928	Hv_44K_v2	GGAGGCCACGCATCTGCCGTGTGAATGTACTGTTCTATCCGTGTGTATTCTATTAAAAAA	996	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	0.353	0.387	1.600	1.375	1.466
Raw	149.249	74.884	80.864	498.367	156.619	179.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64918.1	2058	2e-24	1970 - 2029	100	60 / 60	plus	ABC16901
JLOC1	JLOC1_42663.1	2017	8e-25	1920 - 1979	100	60 / 60	plus
Harvest21	ABC16901	645	3e-25	41 - 100	100	60 / 60	minus	ABC16901
Harvest35	U35_7157	1096	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1096 bp)

>U35_7157 1096 Hv_44K_v2
CACGCGTCCGGCGTCGTGGAGATCCCCTCGCCGGACGTCTCGCTCCCCCGCAAGCTTGGC
GCGGAGTTCGTGGGAACGTTCATCCTCATCTTCTTCGCGACGGCGGCGCCGATCGTGAAC
CAGAAGTACGGCGGCGTGATCTCGCCGTTCGGGAACGCGGCGTGCGCGGGCCTGGCGGTG
ACGACCATCATCCTGTCGACGGGCCACATCTCCGGCGCGCACCTGAACCCGTCGCTGACC
ATCGCCTTCGCGGCGTTCCGTCACTTCCCCTGGCTCCAGGTCCCGGCCTACGTGACCGTC
CAGGTGCTGGGCTCCATCTGCGCCGGGTTCGCGCTCAAGGGTGTCTTCCACCCGTTCCTC
TCCGGCGGGGTCACCGTCCCCGACGTCGCCATCTCCACCGCCCAGGCCCTCTTCACCGAG
TTCATCATCACCTTCAACCTTCTCTTCGTCGTCACCGCCGTCGCCACCGACACCCGCGCG
GTGGGCGAGCTCGCCGGTATCGCGGTGGGAGCCGCTGTGACGCTCAACATCCTCGTGGCC
GGGCCGACGACGGGAGGGTCGATGAACCCGGTGAGGACGCTGGGGCCGGCGGTCGCGGCG
GGGAACTACAGGCAGCTGTGGATATACCTGGTGGCGCCGACGCTGGGCGCGGTGTGCGGC
GCCGGCGTGTACAAGCTGGTCAAGCTCAGAGACGTCAACGGCGAGACGCCGCGCCCGCAG
CGCAGCTTCCGACGCTGATCGATGTATGCGCACGTACTCCACCCCGTGCATTGTCCGGCT
GGTTGCTGATCTATGCCACTATCGATCGAGCAGCGGCGGTGAGATCTATTACTACTAGTA
CGATTTCCGTGTTTCCGTGCCACGGGCACACCGTGACTGCTAAAATTTGTGCGTTCCGTG
ATTGTAATAATGAATTGACGCCGTTTTGCTAGAACTGCGTGGACTTGTGCTTTATTTACT
TTGATTTGATGCACATTATGCCGATACGTCGGCTGTGGAGGCCACGCATCTGCCGTGTGA
ATGTACTGTTCTATCCGTGTGTATTCTATTAAAAAAAACTGTTATATCCATATACAATTA
ACAAAAAAAAAAAAAA

Homology of Contig U35_7157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36924.1	312	1e-147	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g30540.1	302	3e-142
Arabidopsis v10	AT4G10380.1	304	8e-115	\| Symbols: NIP5;1, NLM6, NLM8 \| NOD26-like intrinsic protein 5;1 \| chr4:6431530-6434510 REVERSE LENGTH=304