barSeed - Barley Seed Development Database

Probe CUST_3703_PI390587928

Source Contig U35_5247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3703_PI390587928	Hv_44K_v2	ATGCTTATCTATGTAAACATCATGTACTGACACCATTTTTGCCTTGCTTGTTCTCATGCA	1034	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.633	1.372	1.180	0.867	0.312	0.319
Raw	3397.617	4636.017	3426.263	3966.990	500.450	555.554

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61495.1	2072	6e-24	654 - 712	100	59 / 59	minus	ABC12722 ABC12723 ABC24342
MLOC	AK369821	1817	9e-22	1687 - 1744	98	58 / 59	plus	ABC12722 ABC12723
JLOC1	JLOC1_40187.1	2035	3e-24	1361 - 1419	100	59 / 59	plus
Harvest21	ABC12722	444	3e-25	17 - 76	100	60 / 60	minus	ABC12722
Harvest35	U35_5247	1110	3e-25	1035 - 1094	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_5247 1110 Hv_44K_v2
CGACACCAAGATTCCGCGGAAGGGGGCCGTCATCAAAGGGAAGATCAATGACTCGGTCGA
CAATGTGCATGCCTACATCGTCTTCAAAGATGAGCAGTGTGCGCGGACAGCTTTATCTCA
TAATATGGCACTGTTCAATGGCAATCACATCCGTGTTGACATGGCGTGTCCGCCTCGTAA
AAAGCTAAAAGGAGACGGACCTCTTTATGACAGAAAGAGGACAGTGTTTGTTGGTAACCT
TCCATTCGATGTAAAGGATGAGGAGCTCTACCAGCTGTTCTGCGGTCCCAGTGGACCACA
AGGTGATGTTGAAGCTATACGTGTTGTCAGAGATCCAGATTCAAGCCTTGGAAAGGGTAT
TGCTTATGTTCTATTCAAAACAAGGGAAGCTGCTAACTCCGTTGTAAAAAAACGGGGCCT
TAAGATTAGAGATCGCTTTTTGAGGCTCACCCATGCAAAAGCAGCCGACGCGACACCAAA
GAAGACGGTTGCTGGGAAAACACGCGGCACTCCAAAACAGAAGACCCCTTCTACGCCAGG
CAGCAAGTCCCGCGAAGGCAGCGACAGCAAGAAACGCAAGGCCCCGGCGAGTCTGTCTTA
CCAAGGCCTGAAGTCGACCAAATCTGGCGTCGTGAAGAAGGTGAAGGTGGCCCGGCGCCC
CGTCAAGCAAGGGAATCAGCAGGGAAGGCCCAGCGAGACGGGACAAAGCGAGAGTGCCCG
CAAATCTAAGCGGCCCGCCGTGGCAGCAAGGAAGGCGAAGCAGCTGACCAAGAAACGTAA
GCAGGATGGCCGGACACCCGAGAACACGCACCGCAGCAAGAAGGCGAGGAAGTAGCCGTC
CCTGTGATGGATCGTTCGCTTCACTTTGTAGTAGGAGTGTCAGGTTTTGGATGAAATGAA
TCCCTGATGGCCTTTGGTTCGGCGAGGGAAAAAAAATACGAGGTTGACATTGCTAATGTA
ATGCGGAGAAGAGTCGGGTGTAGTCATTTGGTACTTGCCTTTGGAGTCTTAGCCCCTGTG
CTAATGTCAAGATGATGCTTATCTATGTAAACATCATGTACTGACACCATTTTTGCCTTG
CTTGTTCTCATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63730.1	442	2e-140	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g01110.1	462	3e-155
Arabidopsis v10	AT5G46840.1	501	1e-67	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:19005651-19007609 FORWARD LENGTH=501