barSeed - Barley Seed Development Database

Probe CUST_37038_PI390587928

Source Contig U35_7159

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37038_PI390587928	Hv_44K_v2	CATTGACAGTACTATATGTTGTTAATTTATGAGCTGAGGAATCAGGATTCAGGACTTCAA	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40012.1	853	3e-22	717 - 775	98	58 / 59	plus	ABC17639
JLOC1	JLOC1_26138.1	854	1e-22	735 - 793	98	58 / 59	plus
Harvest35	U35_7159	501	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_7159 501 Hv_44K_v2
TACCAGTGCCCCACGCCGCCCATCCCGGACGCCTCCTGGCCGTTCCCCGGCGGCCTCCAC
AACCTGACGCTGCTCCCGCCGGCGCCAGCTCCTTCGCCGGCGCACTTCTTCCAGCACCAC
CGGCACCACAGCGGCGGGCTCTGAAGCTTGAGCCTCCGAGGTTGCTCTGGGTAACTCTAG
TTGATTAGCGCTGTTACCGATCAATCTAGCAAGGAAAACTACCCGTGAGTAGTCAGCAGG
GAGCTTGCTGTTTCTTTTCTTCTCTTGGATTCAGAGAGGGTGATGAGTGATGACTGATTG
GCTGATGTTTGTCTCTTGTTCTGTGCTATGTCCTGGCGTGAAGCATCTAGCCGTTGCTTT
CTCGTATTCTCATGCATATGCTTTGCTTGGAGCTCCTCTCTTTTGGGGCACCATTCAGTG
CTGTATCATTGACAGTACTATATGTTGTTAATTTATGAGCTGAGGAATCAGGATTCAGGA
CTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None