barSeed - Barley Seed Development Database

Probe CUST_37033_PI390587928

Source Contig U35_7164

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37033_PI390587928	Hv_44K_v2	CTGCCAAGCCCGAGTCCTAGAGTATATTGGAGCTCGGAATATACTGCATCAATCAAAAAA	1466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15664.1	2962	9e-22	331 - 385	100	55 / 55	minus	ABC15852
Harvest21	ABC15852	1536	3e-25	1466 - 1525	100	60 / 60	plus	ABC15852
Harvest35	U35_7164	1537	3e-25	1467 - 1526	100	60 / 60	plus

Contig Sequence (1537 bp)

>U35_7164 1537 Hv_44K_v2
GCCAGCAGCTATTGACTACGTTGCTCTCAACGGAACAAATTCAAAAGGTTCCCTGCAGAA
GGTAAATATTCGTCTGCGTCGCAAGAGGAATCCTATAATTGGTGACAAGTTCAGCAGCAG
ACATGGGCAAAAGGGAGTTTGTTCACAGTTGTGGCCTGACATTGATATGCCGTTCTCTGC
AAATACCGGCATGAGGCCAGATCTCATCATTAATCCTCATGCTTTCCCTTCAAGAATGAC
AATTGCAATGCTTTTAGAGTCCATAGCAGCAAAGGCTGGAAGTGTACATGGAAAGTTCAT
TGATGCCACACCTTTTGCAAGCTCAGTCAAAGAGGAGGGTGAAGATCGTTGTAAATATGA
TTCTATTGTGGATGAACTGGGTCCCATGCTAGCATCTTATGGATTTAATCATCATGGAAC
GGAGGTCATGTACAGTGGGCTTTTTGGCACTGAGCTTAAATTTGAGATTTTCATTGGACC
CGTTTATTACCAACGCCTTCGTCATATGGTCTCAGACAAATTTCAGGTTCGTACAACAGG
TCGTATAGACCAAGTAACGAGACAGCCAATAGGAGGAAGGAAACACGGCGGAGGGATTCG
GTTCGGTGAGATGGAGCGTGACGCGCTCCTTGCTCATGGCGCTTCCTATCTCTTGCACGA
CAGGCTCCATACCTGCTCGGACTATCACGTAGCAGACGTGTGCTCCCTCTGCGGGAGCCT
CCTGTCGGCGACGGTAATAAAATCGGACACGCAGAAGAAATCCAAGCGCCACATGCTGGG
CATCAACACGGTGAAGCCCACCAAGAACTTTGCGTGCCAGGCCTGCCAGACAAACAAAGG
GATGGAGACGGTGGCGATGCCGTACGTCTTCAGGTATCTGGCAGCCGAGCTGGCTGCTAT
GAACATAAAGCTGGACCTCCGGCTGAGCAACATGAGAGAAGCTCCTCCCAGCAACGAATC
ATAGACGGTATACCAGTGATTGATTCGTATCTATTGGAAAAAGAGCATCTATCGTCCCAT
TTTTGGATGTTGTTTAGAGGGGGGAGATTTTGTGTGTTGTATTGTTGTATAAAATAGACA
TTCTTACTTTGCCTTGTACTACTATCTGACATGTAGTTGAAGTCGTAGATTCTCGTCTTC
CAAAAAAAAAGTCGTAGATTCTTGAGGTTTTACGTATGTTCCGCCTGGTTCTCGGTGTGA
CAGACAGGATGGCCTGGTCGAGCTGCTGTCTTGTTCCTTGAGGTTACAAAGCCGCTCCCA
TGGCTAGTATTCTTCTGGTGGTGTATGCGGAGAAATTTTTCTTGATAGAACTTGACCAGG
CAATCCGCAGTTGCTTATAGACATGCAAAACCAGCTCTCCACCTGTTTTCTGAGCAAACC
GTGGTTCGTGAGTGTTGCCAGTAATCTTGATTAGAGGGACAACTCATTGTGTAATCGTGT
TTGTTTCGTTGTGTGGCTGTAAACGGCTGCCAAGCCCGAGTCCTAGAGTATATTGGAGCT
CGGAATATACTGCATCAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35290.1	1036	7e-174	protein\|DNA-directed RNA polymerase I subunit RPA2, putative, expressed
Brachypodium v1_2	Bradi3g29917.1	1101	0.0
Arabidopsis v10	AT1G29940.1	1178	9e-130	\| Symbols: NRPA2 \| nuclear RNA polymerase A2 \| chr1:10479322-10486670 REVERSE LENGTH=1178