barSeed - Barley Seed Development Database

Probe CUST_37030_PI390587928

Source Contig U35_7167

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37030_PI390587928	Hv_44K_v2	TCGGGGAGAACTAGTCTAGTTCTTCCCAACTAAGTATTTATGAACGGAGGGAGTAGTAAA	774	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.637	1.445	1.022	1.100	0.671	0.757
Raw	138.741	184.811	118.954	198.332	43.205	53.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356100	2124	2e-23	1945 - 2002	100	58 / 58	plus	ABC17371
MLOC	MLOC_10889.1	1707	2e-23	87 - 144	100	58 / 58	minus	ABC17371
JLOC1	JLOC1_7162.1	1856	1e-23	1681 - 1738	100	58 / 58	plus
Harvest21	ABC17371	642	3e-25	15 - 74	100	60 / 60	minus	ABC17371
Harvest35	U35_7167	848	3e-25	775 - 834	100	60 / 60	plus

Contig Sequence (848 bp)

>U35_7167 848 Hv_44K_v2
GTGGATATTGTAGCGAGGATTCTGTCGATGGTACCACCATGGACACGAGTCTATCGGGTC
CAGAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTCGAGAAAGGTAACCTGCGTGAG
CTTGCTTTGGCTCGAATGGAAGACCTGGGCTTGAAATGCAGAGATGTCAGAACCCGTGAG
GCTGGAATTCAGGATATCCATCACAAGATCAGGCCTGATGAAGTAGAGCTTGTCAGGCGT
GATTATGCCGCAAATGATGGCTGGGAGACCTTTCTCTCATACGAGGATACAAGACAGGAT
ATCCTTATTGGCCTGTTGCGCTTGCGTAAATGTGGCCGCAATGTTACAGGCCCTGAACTT
GTAGGGAGGTGTTCAATTGTCCGTGAACTTCATGTCTACGGAACAGCAGTCCCTGTGCAT
GGTCGTGATGCGGAGAAACTTCAACACCAGGGGTATGGGACACTCCTGATGGAAGAAGCA
GAAAGAATTGCCCGTAAGGAGCATCGATCAAAGAAACTGGCCGTCATCTCAGGAGTTGGA
ACCCGCCACTACTACCGCAAGCTGGGCTACGAACTTGAGGGGCCTTACATGGTCAAATGT
CTGGCATAGTGTATTTCAGCATCAAACGACACTAGTATTGCAACTAGAAAAATCAAATGC
GATCATGATGTTAAGTGTAATGTATTTGTAACCTTATTAGTAGTTATTTTGAAAATTTTG
TGTTTCCTCTTTTGAGACTTGAGTTATACTCCATATGTACCTAAATACTTGTAGTCGGGG
AGAACTAGTCTAGTTCTTCCCAACTAAGTATTTATGAACGGAGGGAGTAGTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_7167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40840.1	574	6e-136	protein\|elongator complex protein 3, putative, expressed
Brachypodium v1_2	Bradi5g13790.1	570	2e-136
Arabidopsis v10	AT5G50320.1	565	4e-129	\| Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 \| radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein \| chr5:20481200-20484811 REVERSE LENGTH=565