barSeed - Barley Seed Development Database

Probe CUST_3702_PI390587928

Source Contig U35_5248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3702_PI390587928	Hv_44K_v2	GTGTATATAACCGCAGTTTGCGTTTCTTTTTGCCTGCTGTTGTAGTTCTAGAGCAGAAAG	828	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.758	3.754	0.939	1.016	0.483	0.588
Raw	63.664	90.175	23.081	39.898	5.097	8.554

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372868	2413	2e-24	2315 - 2374	100	60 / 60	plus	ABC13530
MLOC	MLOC_20418.1	1362	2e-24	40 - 99	100	60 / 60	minus	ABC13530
JLOC1	JLOC1_14143.1	1523	8e-25	1266 - 1325	100	60 / 60	plus
Harvest21	ABC13530	935	3e-25	48 - 107	100	60 / 60	minus	ABC13530
Harvest35	U35_5248	941	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (941 bp)

>U35_5248 941 Hv_44K_v2
CCGCCTGCCTCTGGGCTGGATGATTCTATCATGTCGTGCTATCTTCACATGGAGAGCGGC
AAGTTCTGGTTCCCCGCACAGGTCTACAACCGAGAGCATGGGCATGTTGGGTTCATGATG
TCATGCTATGATGCAGAGGTCAGCTATGATTTCCGCACTGACACGTTCCATGCAAGGTAT
CCACCACACGGGCGGCGAACTGTAGTCTTGGAGGATGGCGTGCAATGGGAAAGGGTCAGG
GCACCTCCAGTCGAAACTCTTGCACATGACCTGCATGCCTCTGACTGCTTACATGAACTA
CGGCCTGGCGATAACATTGAGATTCAGTGGAGAAGGAACAAGGAGTTCCCATATGGCTGG
TGGTATGGAGTTGTTGGCCACTTGGAATCATGTGATGGAAATGAGCACTTTTGTCGGTGT
CATCTTAGTGACATCGTGGTGCTGGAGTTCAATCAATACACGCCTGGCTCGAGATGGAGG
CAGTCCCTGGTAAATCGAAAGGACCACAGGGAAGAAGGCAACGAGAGCGATGGATTCTAC
GGTGGAATAAGGAAGCTCCAAGACAAGGACGAAATCTCCAAGTGGAAGCAGCTATGGCCA
ACAGATACCCTGGAATAACGGGATTATTCAGCCGTTATTGACTCCTCAATCAAGTTGGCT
AATTGGCATGCCTTCCATTGATCCCACCCGTACTCCCACCATCAGCCACACCCTCCGTTC
AAGTTGTACACAGGGATAGAACACGAGGTGGCAAATTCTGGTGGCTGGACACGGCTGTAA
ACTTGCTGTCGGGCAAAATAAAAGCAGACTGCGGCTGTTTTACGTCTAGTGTATATAACC
GCAGTTTGCGTTTCTTTTTGCCTGCTGTTGTAGTTCTAGAGCAGAAAGATCAAATATAAA
TTACATAAAATTTAGTTCAAATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17390.1	416	3e-140	protein\|OsFBX5 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi2g10870.1	412	3e-143
Arabidopsis v10	AT2G26850.1	371	3e-106	F-box family protein \| chr2:11449369-11450889 REVERSE LENGTH=371