- Probe CUST_37029_PI390587928
- Source Contig U35_7169
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37029_PI390587928 | Hv_44K_v2 | GGAAAGGGATAGTTAGCATAGTTTGCCAATAATTTTTGACGGTACTATACATTGTAGACA | 535 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.759 | 3.042 | 1.256 | 0.663 | 0.250 | 0.286 |
| Raw | 2519.227 | 2044.895 | 750.099 | 600.336 | 83.818 | 103.506 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44488.4 | 1949 | 2e-24 | 1839 - 1898 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44488.5 | 1975 | 2e-24 | 1865 - 1924 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44488.1 | 1990 | 2e-24 | 1874 - 1933 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_28835.2 | 2048 | 8e-25 | 1934 - 1993 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28835.1 | 1988 | 8e-25 | 1874 - 1933 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15935 | 641 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7169 | 658 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus |
Contig Sequence (658 bp)
>U35_7169 658 Hv_44K_v2 ACCAGTAGCAAAACAAAGATGGGGCAGCACACAAATTCAAGATTTATTACCGTGCTAACA TGGGCGATCGGCTCCTTCATCATGGTCATCAACATCTACTTCCTGATAACAAGCTTCGTC AAGCTGCTCCTTCACAACGGGCTATCCACCGTCTCCCAAGTATTCGCGGGGATATTTGGG TTCCTCGGCATGCTCATATACATCGCCGCAATTCTCTACCTCGTCTTCAGGAAGAACAGG AAGTGTACCTTGCCGTTGCTCGAGAGCGATGCGAAGCTTGGGGCCGCCGCAGGCCACGCC GAGGGAGAAGGTTCTCTTGGCCATCTTCCCCGGGAGGATATCTCCAGCATGCAGCTTCCT CATCAGCGCCATGCGTCTGATTTGGACTAGATGTATAGTTGCTGCAATGAGGAAACTAGA TGTCTCCGATCATGGTGATAATTAGTAGCTGCATAACTGAAGAGCTAGGTGTCATCAGGA ATTGGCGTAGATAATCGAAGAGATTTTATAGTCCCTGAATTAAAATCCTTCTTGCGGAAA GGGATAGTTAGCATAGTTTGCCAATAATTTTTGACGGTACTATACATTGTAGACAAGTGG ATTTTTATTATCTATAATCAAGAAAAGGAATGAATTTCATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_7169 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g46310.3 | 493 | 9e-53 | protein|metal transporter Nramp6, putative, expressed |
| Brachypodium v1_2 | Bradi1g32640.1 | 552 | 5e-54 | |
| Arabidopsis v10 | None |