barSeed - Barley Seed Development Database

Probe CUST_37028_PI390587928

Source Contig U35_7170

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37028_PI390587928	Hv_44K_v2	TCATAAGCCAGGGTTGATGCAAAGCGTTCCCTTGAGAGAAAAAGAAAAGTGGTTTTTTCG	1113	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.212	0.351	0.861	1.665	1.232	1.419
Raw	383.760	1087.309	2211.290	6352.417	1743.637	2168.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1956.1	1283	7e-23	11 - 70	98	59 / 60	minus	ABC18424
JLOC1	JLOC1_1189.1	1351	4e-23	1229 - 1288	98	59 / 60	plus
Harvest21	ABC18424	1187	1e-23	1108 - 1167	98	59 / 60	plus	ABC18424
Harvest35	U35_7170	1211	3e-25	1114 - 1173	100	60 / 60	plus

Contig Sequence (1211 bp)

>U35_7170 1211 Hv_44K_v2
GCAACCCGCGAAACAAACCACCAGCCGGCAAGCAATCCGCGCGCCCATTGTTCTCCTCTC
CCTCTCTCTCTTTCCGTTCCGGATCAGCTCCGACGGCATGGCCGCGCCTGCACCCTCCAA
GAGGAGAGGCAGCGGCGGTGGGGAGAAGAAGGATCTGTTCCACGTCGTCCACAAGGTGCC
CGCCGGCGACAGCCCCTACGTCCGGGCCAAGCACCTCCAGCTGGTGGAGAAGGATGCGGA
GGCGTCGATCGTGTGGTTCTGGAAGGCGATCAACTCCGGGGACAGGGTGGACAGCGCGCT
CAAGGACATGGCCGTGGTGATGAAGCAGCAGGACCGCGCCGAGGAGGCGATAGAGGCCAT
CAGATCCTTCAGGCACCTCTGCTCCAGGCAGGCCCAGGAGTCCCTCGACAACCTGCTCAT
CGACCTCTACAAGAAATGTGGAAAAGTCGACGAGCAGATAGAGCTGCTGAAACAGAAGCT
CAAGATGATATGCCTTGGCGAGGCCTTCAACGGGAAGATCACCAAGACGGCACGCTCCCA
CGGCAAGAAGTTCCAGGTCTCGATCCAGCAGGAGATGTCGCGCATTCTGGGTAACCTTGG
CTGGGCTTACATGCAGCAGAACAACTATGAAGCTGCTGAATTGGTGTATCGGAAGGCCCA
GACTATCGTACCTGATGCCAACAGGGCGTGCAACCTAGGGCTGTGCCTGATTAAGCAGGG
TAGAGATGAGGAGGCAGTGCAAGTGCTTGAGGATGTCCTACTTCGCAGAATCTCTGGGTT
GGATGGCGACAAGGCGGTAGCCCGAGCTGAGCAGCTCCTCCGTGAGCTCGGTCCGATAAC
ACATGTTTCATCGCCCTTTGATGTTGGCTTGAGTTTCCCCGAAGAGATCATGGAGAGACT
TGACCTTGTGATGAATGAGTGGACGCCGTTCAGGTCGAGGAGGCTGCCCGTATTTGAGGA
GCTTGATGCATTCAGGGACCAAATGGCTTGCTGATTCATTACTTCATCTGTTTTTGTTCA
TTTGCTTGTGGTAAATAGAAGTTGTTGTGCATGTATATAGGAGCTGTTGTTGATGTTACT
AGTGTGGAAGAGAGGTCGGATAGATCATAGATATCATAAGCCAGGGTTGATGCAAAGCGT
TCCCTTGAGAGAAAAAGAAAAGTGGTTTTTTCGCCCAAAAAAAAAAAAAAAACTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_7170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43040.1	300	4e-168	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g20540.1	294	0.0
Arabidopsis v10	AT5G48850.1	306	1e-117	\| Symbols: ATSDI1 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:19805576-19807699 REVERSE LENGTH=306