barSeed - Barley Seed Development Database

Probe CUST_37025_PI390587928

Source Contig U35_7173

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37025_PI390587928	Hv_44K_v2	TGCTAAAAAGAAAGGGAAGAAAGGATCTTCTAAGGACGATGATGGTGACAATGCTAGCGA	882	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.604	1.093	1.393	0.610	0.493	0.381
Raw	150.186	147.235	177.190	107.316	34.259	29.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374591	2734	2e-24	660 - 719	100	60 / 60	plus	ABC07056 ABC14756
MLOC	MLOC_3539.4	1335	2e-24	734 - 793	100	60 / 60	minus	ABC07056 ABC14756
MLOC	MLOC_3539.3	2450	2e-24	1849 - 1908	100	60 / 60	minus	ABC07056 ABC14756
MLOC	MLOC_3539.2	2735	2e-24	2134 - 2193	100	60 / 60	minus	ABC07056 ABC14756
MLOC	MLOC_3539.1	2852	2e-24	2251 - 2310	100	60 / 60	minus	ABC07056 ABC14756
JLOC1	JLOC1_2128.1	4175	8e-25	1846 - 1905	100	60 / 60	plus
Harvest21	ABC14756	991	3e-25	883 - 942	100	60 / 60	plus	ABC14756
Harvest35	U35_7173	991	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (991 bp)

>U35_7173 991 Hv_44K_v2
GCACGAGGAGAAAAAGAAGAAGAAAGAAAAAGAGAAGGAGAAGAAGGCAGCAGCAAAGGG
GACAGATGCTAAGAAGGAGGAGGAAAGGGAGCCAGAGGCGCCTAAAGGCAAGGTTGACAT
GAAGAAGCTCCCTAAGCATGTCCGGGAAATGCAGGAGGCTCTTGCGAAGAGGCAGGAAGC
CGAGGAGCGGAGGAAAAAAGAGGAGGAAGAACGTATGAGGAAAGAGGAAGAGGAGCGTTT
GAAGAAAGAGGAGGAGGAGAAGAAGGCAGAGGAAGCAAAGAGGAGGAAGAAGGAGAGAGA
AAAGGAGAAGCTGCTCAAGAAGAAGCAGGAGGGTAAGCTTTTAACAGGGAAGCAGAAGGA
GGAGGCCAAGCGGTTAGAAGCCATGAGGAGACAATTCCTTGGCGAGAGTGAGGTTCCAGT
AGCTGATGGGGCTGCCCCTGAGATAAAGAAGAGGCCCAAGTATGATAGCAAGAAGAAAAA
AGCTCAAACAAAGACTTCAGAGACTCAGAAGGTAGCTGAAGAACAACAGCAAGAGGTAAA
TGAAGCCAACATTGATGAGGAAGAGTATGTCATAGTGGACCAGGAATCTCAGTCTCAGGT
GGCAGAATCTGAGACAAAAACAGAACCCGACCAAGAGGTGGAAGATGCAAAACACGAGGA
GGAGGAGGAAGATGAAGATGACTGGGATGCAAAGAGCTGGGATGATATCGATGTGGGTTT
GCCGAAGACAAGTGCTTTCGAGGAGGAAGAGGAGAAGCCTGTTGCCACGAAGCAGGAAAC
TTCCAAACCACAACCTGCAGTGCCTGCTGTAAAAAACGTTGCTCCGCCTGTTGACAACTC
CAAAAAGAGTGACACTGAAAATGTGCGTGCCAACAACGGAATTGCTAAAAAGAAAGGGAA
GAAAGGATCTTCTAAGGACGATGATGGTGACAATGCTAGCGACCTCCGTTCTCCAATCTG
GTGCATCCTTGGTCATGGCGATACTGGAAAG

Homology of Contig U35_7173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None