barSeed - Barley Seed Development Database

Probe CUST_37022_PI390587928

Source Contig U35_7177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37022_PI390587928	Hv_44K_v2	CTTTTTCAGGCTCGGATAGAGATGATTGCAGGAGAGTCTACTTGTAGGATGACAAGTTGT	772	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75199.1	200	7e-23	66 - 122	100	57 / 57	minus	None
MLOC	MLOC_25709.3	699	7e-23	557 - 613	100	57 / 57	plus	ABC02236
MLOC	MLOC_2264.1	355	7e-23	9 - 65	100	57 / 57	minus	None
MLOC	MLOC_1421.1	102	7e-23	38 - 94	100	57 / 57	plus	None
JLOC1	JLOC1_6212.3	467	8e-25	207 - 266	100	60 / 60	plus
JLOC1	JLOC1_6212.2	481	8e-25	221 - 280	100	60 / 60	plus
JLOC1	JLOC1_6212.1	2345	8e-25	2086 - 2145	100	60 / 60	plus
Harvest21	ABC14205	417	3e-25	358 - 417	100	60 / 60	plus	ABC14205
Harvest35	U35_7177	832	3e-25	773 - 832	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_7177 832 Hv_44K_v2
CCCCATCCCACCCTTCCTCTCCTCCCTCGTCCCCATCTCCTCGCCGCCGCTGCCACCTCC
TCCCCGTCCCCGCCTCCCTCCCGATCCCCACCTCCTCCCTGTCACACCCCATTCCAATCT
CCCCAGTCCGCAGCCTCCCCAAACCCCCATCCCTCCCTCCCTCCCTCATTCCCAGATCCG
AGCCCTCCCCCAGAACCCTAGCCAGCCCATGGCGCCGCCAAGCTCGCCGCCCTCGGCCGC
CGCGCCATCGCGGGGCTCCTCCGCCAAGGCACGCCCGAGGCCGACCAGGAGGCCTCGGTC
ACCAAGCGCCCCCGCAAGGGCACCTCCTCCGGCAAGAAGAAGCCAGCGCCCAAGGCCGCC
AAGAGGTAGCAGAAGGCCACCAAGGTGCCGCGGGAGAAGAAGGAGAAGGCGTAGGAGAAC
CCGGCGGTGGAGGACGAGGTGTGCGGGGAGGAGCCCGACGAGGAGGAGCTGGCGCTCGGG
GAGGAGGAAGAGATGGCCGCCTCCGGGGAGCAGCAGCAGGAGACGGCGGCGGCGGCCAAG
AGGCGCGTGGCGCAGCCGACCAAGAAGGCCCGGAACGTGGCCGCCGGCGACAGGGAGCCC
GAGTTCCTCGGCGAGCCCGTCCCCGCCGACGAGGCCTGTTCCAAGTGGCCGCAGCGCTAC
CAGCACGGCTCCCCCTAAGTGGTGTTTTCACCGAGTTGATTTAGGAGATGGAAGTAAAAG
GTGTACAGGTTAGCTTCCAGGGGTTGTCTGCAAAATAAAATGGGATTTGCTGCTTTTTCA
GGCTCGGATAGAGATGATTGCAGGAGAGTCTACTTGTAGGATGACAAGTTGT

Homology of Contig U35_7177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None