barSeed - Barley Seed Development Database

Probe CUST_3701_PI390587928

Source Contig U35_5249

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3701_PI390587928	Hv_44K_v2	CCGTGAATGATCCAAGATTTTGGGGAATTGAGTTTATGAAACTTGTGTTTTTCTGTCAAA	1549	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.333	0.541	1.238	1.853	1.097	1.411
Raw	35.380	90.311	184.030	415.296	89.099	124.657

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355399	1574	7e-23	1518 - 1574	100	57 / 57	plus	ABC14882 ABC44750
MLOC	MLOC_74488.1	1390	7e-23	1333 - 1389	100	57 / 57	plus	ABC14882 ABC44750
Harvest21	ABC44750	199	3e-25	15 - 74	100	60 / 60	minus	ABC44750
Harvest35	U35_5249	1623	3e-25	1550 - 1609	100	60 / 60	plus

Contig Sequence (1623 bp)

>U35_5249 1623 Hv_44K_v2
AAGGTGGTGGCCAGGCCATGCCGCGCGCTCACCTCGCAGCAACCATGCCGCTGCTAGCCC
CAGCCGGTAAAACCCTGTTCCCCTCCCGCCTCCCGCCCCCGCCTTCGCCTCGCCTCCACC
TCCACCTCCGCCGCGCCACCGCCACCGCTGCCGGCGGGAGGGGCGACGGTGCGGCCGAAG
CGTCGGCGGCGTCCGGCACGTCGGCCAGGGACCGGCGGCTGGCCAGGGTGCGGGAGGAGC
GGCGCCGCCGTGAGTACGACCGCGAGCATACCTACCCCGGCTGGGCCAGGGTCCTGGAGA
ACGCCTGCAGGGACGACGAGGAGATGCGCGCCATCCTCGGCGACAGCATCCGGAACCCGG
AGCTCATGAAGCACATGATACAAGAGAGGGTGCGCGCGAAAGGCAGGGATGGCTTCAACA
GACCCAAGACGGGCTCCGTCGCCGCGTTCAAAGTCAGCTTCCGAGACTTCAACCCGTTAA
ATGCTTTCATCTGGTTTGAGCTCTTTGGAGAACCAACCGATCGAGATGTTGACCTTCTTG
GCGGTGTTATTCAGGCTTGGTATGTCATGGGAAGGCTAGGAGCTTTCAACTCTTCAAATT
TGCAGCTGGCGAACTCAATGCTGGACTTTGACCCTTCGTATGATTCTGAAGAAGCTTCTG
CTGTAATGCCTTCATCTTTCCACGATATCAGTGATGTCGAGTTCCAAGACAGTTGGGGCA
GAGTGTGGGTGGACCTTGGGACTTCAGATCATCTTGGATTGGATGTACTACTGAACTGTC
TTACACAATTAAGCTCAGAACACTTGGGCATCAAACAGATTGTTTTTGGCGGCAGAAAAT
TGGGCGACTGGGAAGAAGGCATGACGAGCTCGGACTATGGATATAAGCACTTCAAAATAT
AGGAATCCAGACAAGTGGTATGCGGCTCCATGGGATCACACAATCCCCAATAGTCGAGAT
AAATTTTGTTTAGGAACGAGTTAGGACTAGTCCCAATTCCCAGGACCGGCTGGATTTGGA
TTGCGCGCTTGTGTATGTATGTAAATAATTTCCAAAGCCTAGTGTGTGTCCGTGTCCCTG
CTCTAGTGTCCAATGGTTAAGAGCATAGAGGCTCTTTGGCTGCTTTCCTTAGCCGCCAAG
ATGCATTCGAGAAGAAGGTGGATGAGAGATTCACATCTTTGAAGTTGAAGGTTGCCTCCT
TTGCTAGTGATGTCAAGTCAGTCCAGTAAATGATGGCAAGGCCTCTGCTTCCTGTTCCTC
AAGCAGTTTTCCCAGATGCCGACTGATGATGAGGGCAATGCTTCAGTGTCTCCTGCACAC
CTTGAGTTTCCCCTCGGTGACCGTCGGTAGCCAAGACACGAGGGCTTCACCTTCTATGGT
CACCGATGTTCTGGAATCTTAGTCTAGTGGGATGTTAGCTCTTCTTTTTTATGTCAAAGG
GGTGAATTTTAGGCTAGACGGCTTCCTGGTTATGAGAGTTTGAGATGAAGAATCCATGGC
TAGACAGCATTTTCATGTAGACTTCAATTTGGCTCTGTTTTTTCTACTCCCGTGAATGAT
CCAAGATTTTGGGGAATTGAGTTTATGAAACTTGTGTTTTTCTGTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_5249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58120.1	277	1e-133	protein\|oxidoreductase/ transition metal ion binding protein, putative, expressed
Brachypodium v1_2	Bradi3g60290.1	286	3e-142
Arabidopsis v10	AT5G08400.1	333	7e-107	Protein of unknown function (DUF3531) \| chr5:2707225-2708911 REVERSE LENGTH=333