barSeed - Barley Seed Development Database

Probe CUST_3700_PI390587928

Source Contig U35_5250

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3700_PI390587928	Hv_44K_v2	TATGTAAAATCTGATGATCAAGTTTGTTTTGCACTCCCATGTTTAATGTAGAGCGTTGGC	819	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369221	1685	2e-24	1621 - 1680	100	60 / 60	plus	ABC11723 ABC46307
MLOC	MLOC_70311.1	1449	2e-24	1303 - 1362	100	60 / 60	minus	ABC11723
MLOC	MLOC_70312.1	1179	2e-24	1033 - 1092	100	60 / 60	minus	ABC11723
JLOC1	JLOC1_46661.1	529	8e-25	382 - 441	100	60 / 60	minus
Harvest21	ABC11723	974	3e-25	897 - 956	100	60 / 60	plus	ABC11723
Harvest35	U35_5250	1047	3e-25	970 - 1029	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_5250 1047 Hv_44K_v2
GACCCACGGGCCCTCGTCCACTTCGCACGGCGCACCTCTTCACAGCAGACCTCACTCTCA
GATTCACAAGCAGCGGCATCTCCATCACCGCCGCCGTCGCCGCCGCCGCCCTCGCCTCCT
CCCGTCCCCGTGCACGCCCACTGTCTCGCCGTCCCTGCGCCTCCCTCCCCGCGGCCCGGT
CCTTCTTCCTAGCTCCGGAAATGGGTCTCCTCAGCATCATCAGAAAAATCAAGCGCAAGG
AAAAGGAGATGCGTATTCTCATGGTCGGCCTGGACAACTCGGGTAAGACGACAATTGTGC
TCAAGATAAATGGGGAGGACACCAGTGTCATCAGCCCTACTCTTGGCTTTAATATCAAAA
CCATCCAGTACCAAAAGTACTCGCTGAACATATGGGATGTCGGGGGCCAGAAGACCATCC
GTTCGTATTGGAGGAACTACTTCGAGCAGACTGACGGTCTAGTTTGGGTGGTGGATAGTT
CCGACGTCCGAAGGCTCGACGATTGCCGTGCTGAGCTCCACAATCTTTTGAAAGAAGAGA
GACTGGCTGGATCGTCGCTGTTAGTTTTCGCAAATAAGCAGGACATCCAGGGCGCTTTGA
AGCCTGACGAAATCGCCAAGGTTCTGAATCTTGAAGTGATGAACAAGGACCGGCACTGGA
AGATCGTCGGCTGCAGCGCCTACACGGGCGATGGCCTGCTCCAGGGCTTCGACTGGCTGG
TCCAGGACATCGCCTCCCGCATCTACGTCCTCGACTGAAGTCTCGACATTTTAGCCATAT
GAACTAGTGTTATTAGTTACGCGGCAATCATGTAATATGTATGTAAAATCTGATGATCAA
GTTTGTTTTGCACTCCCATGTTTAATGTAGAGCGTTGGCGCATCATGTAATATGTATGTA
AAATCTGATGATCAAGTTTGTTTTGCACTCCCATGTTTAATGTAGAGCGTTGGCGCATCA
TGTAATATGTATGTAAAATCTGATGATCAAGTTTGTTTTGCACTCCCATGTTTAATGTAG
AGCGTTGGCGCANAAAAAAAAAAAAAA

Homology of Contig U35_5250 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22140.1	186	5e-94	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi4g00930.1	186	1e-99
Arabidopsis v10	AT2G18390.1	185	8e-93	\| Symbols: TTN5, HAL, ARL2, ATARLC1 \| ADP-ribosylation factor family protein \| chr2:7988335-7989374 FORWARD LENGTH=185