barSeed - Barley Seed Development Database

Probe CUST_37009_PI390587928

Source Contig U35_7190

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37009_PI390587928	Hv_44K_v2	ATTCGGCGCTGAGATTCTTGTGGATGATTGATTCTCCCCTTTTGTATTGATCCTGAAGTT	625	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.331	1.505	1.171	0.776	0.328	0.330
Raw	1329.240	2318.323	1591.600	1663.904	245.130	267.401

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15448.2	2352	2e-24	113 - 172	100	60 / 60	minus	ABC16654
MLOC	MLOC_15448.1	2704	2e-24	360 - 419	100	60 / 60	minus	ABC16654
JLOC1	JLOC1_10598.1	2662	8e-25	2281 - 2340	100	60 / 60	plus
Harvest35	U35_7190	688	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_7190 688 Hv_44K_v2
GTACCAGTATGACTCAGTTTCCCTTGCTGGCATCGAGGAGTTGGATCCTCTCGTGGATTT
GACAGACATCGGATGAGAATAAATGGACATTTTGGCTTAGATAGCATGCATGCCCTTCTA
TCAAGAGCAGGGAAGATTCTGTCTCTGGCAGGGAGCCCAAGGATATCGAGTCGAGCTGCT
CAGCCATGCATGGTTTTGGTTGCAAGCTTGGTCATGATTGGCAGGAGCGGTGCTGTCGGC
GTGGCCACGTGAATCCTGATGAGTTTTGGAGCATGGCGTTTGCTGCTGCACTAATGGAGG
CATTGGGGGTACTCTCTATACATGTATGTATATTGTTAGTCTAGGATCCTAGGATGTAGA
AGTGAGCCTCCCTCCCTCCCTCCCTCATCTGTGTTGAGAGATCGATCTTGTAACTTCACC
ATACATGTAAATTTTGCTTAGCAGATGCCAGCAGGGACGGAAAAGAGGAGGCCCTCGTCG
TAGCCCTGCTGTGATTTCTTGATTGTTGCTCCCTCGGCCGTCTAATCTATTCCTGTCATT
TTTCCTACCGGGCATTAGAAAATTAACAGACGTGTACCCCCCCGTTGTGAAACAGACACT
TGGGATCGATTGCTCTTTTGAGAGAATTCGGCGCTGAGATTCTTGTGGATGATTGATTCT
CCCCTTTTGTATTGATCCTGAAGTTTGA

Homology of Contig U35_7190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None