barSeed - Barley Seed Development Database

Probe CUST_36998_PI390587928

Source Contig U35_12201

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36998_PI390587928	Hv_44K_v2	GATCAAAATTTGAGTCTCTGGTGAATAGTCTGATTGAGAGGACCAGAGAGCCATGCAAGA	108	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.733	0.547	1.094	1.622	2.489	1.213
Raw	4.413	3.821	11.505	23.676	14.217	7.301

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359780	2337	2e-24	1091 - 1150	100	60 / 60	plus	ABC06096 ABC22700
MLOC	MLOC_61727.1	2549	2e-24	1246 - 1305	100	60 / 60	plus	ABC06096 ABC22700
JLOC1	JLOC1_40353.1	2493	8e-25	1177 - 1236	100	60 / 60	plus
Harvest21	ABC22723	572	3e-25	109 - 168	100	60 / 60	plus
Harvest35	U35_12201	572	3e-25	109 - 168	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_12201 572 Hv_44K_v2
CTGAGAAGGCAAAAATTGAACTCTCCTCAACTACCCAGACTGAAATCAATCTTCCGTTCA
TCACTGCTGATAACAGTGGAGCAAAACATCTGAACATCACACTGACAAGATCAAAATTTG
AGTCTCTGGTGAATAGTCTGATTGAGAGGACCAGAGAGCCATGCAAGAGCTGCTTGAAGG
ATGCCGGCATAACCACCAAGGATGTTGATGAGGTCCTTCTTGTCGGTGGAATGACAAGGG
TTCCAAAAGTGCAGGATATAGTTTCTGAAATCTTTGGCAAGGCCCCCAGCAAAGGAGTCA
ACCCAGATGAAGCTGTCGCCATGGGGGCTGCTATTCAGGGTGGCATTCTCCGTGGAGATG
TGAAGGAGCTTCTTCTCCTTGATGTTACCCCTCTGTCACTTGGTATTGAGACTCTTGGCG
GTATCTTCACCAGACTGATTTCCAGGAACACTACCATCCCCACAAAGAAAAGCCAGGTGT
TCTCAACCGCTGCTGACAACCAGACGCAGGTGGGCATCAAGGTGCTGCAAGGCGAGCGTG
AGATGGCAACAGACAACAAGCTGCTGGGCGAG

Homology of Contig U35_12201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02260.1	677	4e-118	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi3g57450.1	682	9e-116
Arabidopsis v10	AT5G09590.1	682	5e-113	\| Symbols: MTHSC70-2, HSC70-5 \| mitochondrial HSO70 2 \| chr5:2975721-2978508 FORWARD LENGTH=682