barSeed - Barley Seed Development Database

Probe CUST_36996_PI390587928

Source Contig U35_12203

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36996_PI390587928	Hv_44K_v2	ACACACACATCGGTAGGGAAGCTCACCACAAACACATCCAATGGAGTCGTCGGTGGCGGT	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356492	1964	2e-24	1473 - 1532	100	60 / 60	minus	ABC45672
MLOC	MLOC_53308.1	377	2e-24	182 - 241	100	60 / 60	plus	None
JLOC1	JLOC1_34237.1	315	8e-25	157 - 216	100	60 / 60	plus
Harvest35	U35_12203	393	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (393 bp)

>U35_12203 393 Hv_44K_v2
AGCACCACAAACACACACATCGGTAGGGAAGCTCACCACAAACACATCCAATGGAGTCGT
CGGTGGCGGTGGTGGCGGTGCCGTTCCCGATGCAGGGCCACCTGAACCAGCTGCTGCACC
TGTCGCTGCAGCTCGCGTCGGAGCCGCGCGGCCTGGACCTGGACCTGCACTACGCGGCGC
CCGCGGCGCACGTCCGCCAGGCCCGCGCGCGCGTGCACGGCTGGGACGCGCAGGCGCTCC
GCTCCGTCCACTTCCACGAGCTCGACATCCCCGCGTTCGCCGCCCCGCCGCCCGACCCGG
ACGCCGCCTCGCCGTTCCCGGCCCACATCATGCCCATGTTCGAGGCCTACGTCGCCGGCG
CGGCCGNCCCGCTCGCCGCGCTCCTCCGGGAGC

Homology of Contig U35_12203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None