barSeed - Barley Seed Development Database

Probe CUST_36995_PI390587928

Source Contig U35_12204

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36995_PI390587928	Hv_44K_v2	CCAGACCTCCTCCCTCCAGCTCGCAGCCCTAAGGCCTGGGACCGTGTTCTGCGACTATCT	468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354895	2184	7e-23	487 - 546	98	59 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72453.2	3667	7e-23	3482 - 3541	98	59 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.3	3767	7e-23	3582 - 3641	98	59 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.4	4092	7e-23	3907 - 3966	98	59 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.1	4304	7e-23	4119 - 4178	98	59 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.6	1881	7e-23	1696 - 1755	98	59 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.7	2296	7e-23	2111 - 2170	98	59 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.5	2892	7e-23	2706 - 2765	98	59 / 60	minus	ABC14166 ABC39907
JLOC1	JLOC1_48190.3	2421	4e-23	127 - 186	98	59 / 60	plus
JLOC1	JLOC1_48190.2	1863	4e-23	127 - 186	98	59 / 60	plus
JLOC1	JLOC1_48190.1	2431	4e-23	127 - 186	98	59 / 60	plus
Harvest21	ABC23977	528	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_12204	528	3e-25	469 - 528	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_12204 528 Hv_44K_v2
CACTCGCAGGCAGACGGACAGCATCGCTGCTCCGCCGCCGCGCGCGCAGTGCAGAGCTCG
GCGTCATCCAGCCATGTCCGCCCACCTCCGCCTCCTCTCCGCCGCGGCCGCGCTCCCTGC
CGCGGCCTCCCTCCGCCGGGCCCGGCCGCTCCCGCCCGCGCCCCCGCTGCCCTCCGCCCG
CCTCCACGCCCCGCACCGGCGCGGCCTCTCCACGCGCGCGCCCCCGCTGCCCTCCGCCCG
CCTCCTCGCCCCGCACCGGCGCGGCCTCTCCACGCGCGCGCCCGCCCGCGTCCGATGCGC
CGCCGCGGCCGACGGGGGCGAGCGGGAGGCGGCGGCGGTGGAGGCCATAGCGGCGGAGGG
CGCCGGGATATGGGCGCAGATGCGGGACGTGTTGGTGTTCGCCGGGCCGGCGCTCGGGCT
CTGGATCTGCGGCCCCCTCATGAGCCTCATCGACACCATGGTCATCGGCCAGACCTCCTC
CCTCCAGCTCGCAGCCCTAAGGCCTGGGACCGTGTTCTGCGACTATCT

Homology of Contig U35_12204 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None