barSeed - Barley Seed Development Database

Probe CUST_36994_PI390587928

Source Contig U35_12205

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36994_PI390587928	Hv_44K_v2	TGACAGACGTGGCTGTAGAAATTTCAGTATGGGATCTTGACGGTGCATCCCCATATTACA	738	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.080	2.164	1.045	0.775	0.655	0.793
Raw	41.164	43.049	19.299	22.455	5.635	8.340

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58956.1	2768	2e-24	822 - 881	100	60 / 60	minus	ABC21227
MLOC	MLOC_58956.2	3472	2e-24	797 - 856	100	60 / 60	minus	ABC21227
MLOC	MLOC_58956.3	3390	2e-24	797 - 856	100	60 / 60	minus	ABC21227
JLOC1	JLOC1_38331.3	3515	8e-25	2460 - 2519	100	60 / 60	plus
JLOC1	JLOC1_38331.2	3444	8e-25	2389 - 2448	100	60 / 60	plus
JLOC1	JLOC1_38331.1	4013	8e-25	2958 - 3017	100	60 / 60	plus
Harvest21	ABC26094	798	3e-25	739 - 798	100	60 / 60	plus
Harvest35	U35_12205	798	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (798 bp)

>U35_12205 798 Hv_44K_v2
GCAACAGAGCACTGAAGAATGATTTGAAGCTACATCCTATGTTTTTGAGCAACCAGGCAA
CAAAAAATCAAGGAAAGTATCTATCGCAGGACCCAACTGACCCAAGTAAATACCTGGATG
GTACTAGGGCGTATGTCCAAGGTTCGATGTGGGATGGTTTTGCTGATGGGAAAGGTGACT
TCACTGATGGTCCATATGAGATTCAGTATCCAGAGAGCTTTTTCAAGAATAGTTTCTACA
AATATGGGTTTAACCCTGAAGTTGGTTCTGTGGGGGTTCCAGTTGCTGCAACAATTAGAG
CAACAATGCCTCCAGAAGGGTGGAGTATTCCAATTTTTAAGAAGAGAATTGATGGGTACA
TAGAAGAAGTCCCAAACCCGATATGGGATTACCACAAGTACATTCCCTACTCGAAACCGG
GGAAGGTGCATGATCAGATTGAACTATATGGCCATCCAAAAGATCTTGATGATTTCTGTG
AAAAAGCACAATTGGTCAATTATGTTCAGTACAGAGCTCTCCTGGAAGGATGGACTTCTT
TCATGTGGACAAAGTTCACAGGTGTTCTAATTTGGAAGACGCAAAATCCATGGACTGGAC
TACGAGGACAGTTCTATGATCATCTCCAAGACCAAACTGCCGGGTTCTATGGTTGCCGTT
CTGCTGCTGAGCCAATTCATGTCCAATTGAATTTGGCCAGTAACAACATAGAGGTGGTAA
ACACTACGTCCGGTGAGCTGACAGACGTGGCTGTAGAAATTTCAGTATGGGATCTTGACG
GTGCATCCCCATATTACA

Homology of Contig U35_12205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32530.1	985	1e-176	protein\|mannosylglycoprotein endo-beta-mannosidase, putative, expressed
Brachypodium v1_2	Bradi2g26600.1	980	9e-173
Arabidopsis v10	AT1G09010.1	944	1e-146	glycoside hydrolase family 2 protein \| chr1:2895259-2899287 REVERSE LENGTH=944