barSeed - Barley Seed Development Database

Probe CUST_36988_PI390587928

Source Contig U35_12212

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36988_PI390587928	Hv_44K_v2	TCACGCTCGCTCATCTTGATGGGGGGCGGTAGTTTTCTTTCACTTCTTTTTCCTAAAAAA	419	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.842	1.732	1.203	0.717	0.451	0.493
Raw	1601.303	2181.719	1416.583	1270.141	294.416	350.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_12212	490	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (490 bp)

>U35_12212 490 Hv_44K_v2
GTAGCAAAATTTCCGGAGCACCCCTGCTTCAAAGCTGGTCTCCTCCTGCGAGCAGATCCT
AAGCCTGCGGTACAGCCGGGTTCTGCTGACGATGGTGAAGGTCGAGCCGTACACAGCAGA
GGTCGAGAGGATAGGCGAGGAACGGCACCAGGAGTTCAGGGAGAACCACCAGAATATGGA
TGGAGGAGGGCAACCTGCACTCCGCTGTCTTCAGCCCGGCGGAGCATGATGGGAAGCCCA
AATTTGATAAAGATTCCAAGCCGAAGTACAGAGGCAAGTACGTGTAGTGACGATANACAC
TCTGGGATGACAGTTTTGTTATCTTTCAGTAAGGGCTGTTGTGTGGCTTGTGCTGGGTTT
ACAAGCTAGCGCCAGTTAGTGCTGGGAGCTGTATGGTGTACTCTCAACTTGATATTATGT
CACGCTCGCTCATCTTGATGGGGGGCGGTAGTTTTCTTTCACTTCTTTTTCCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_12212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None