barSeed - Barley Seed Development Database

Probe CUST_36975_PI390587928

Source Contig U35_24200

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36975_PI390587928	Hv_44K_v2	CTCTCGACTGCCTCTGTAAAGTACCAGAAAGCATGTATAATAGTAGTACTTGTCTGGGCC	1318	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.054	3.087	1.300	0.515	0.180	0.153
Raw	133.199	308.068	114.488	73.119	8.251	8.160

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC26342	779	3e-25	1 - 60	100	60 / 60	minus	ABC26342
Harvest35	U35_24200	1378	3e-25	1319 - 1378	100	60 / 60	plus

Contig Sequence (1378 bp)

>U35_24200 1378 Hv_44K_v2
GGGTGCTTCCAATATATTCAGCTAGACCAGATCAAGTAGCGAAGGCACTAAAGCATGTCT
ATAATGTAGCACTACACAAACTCAAGGGTAAAGAACTTGAGCTTCTTTTGGCCATCCTCC
CAGACAATAATGGAGCTTTATATGGTGACATCAAACGTATCTGCGAAACCGATTTGGGCT
TGATATCGCAGTGTTGCTTAACGAAACATGTTTTTAAGATCAGCAAGCAGTATTTGGCAA
ATGTCTCGCTTAAAATCAATGTTAAGATGGGAGGAAGGAACACCGTGCTCGTGGATGCGC
TAAGTTGGAGGATTCCCTTGGTCAGTGACATACCAACTATTATATTTGGGGCAGATGTAA
CACATCCTGAAACTGGGGAGGACTCTAGTCCATCCATTGCTGCAGTTGTGGCTTCTCAAG
ACTGGCCGGAAGTTACAAAATATGCTGGATTGGTGTGTGCACAGGCACATCGACAAGAGC
TCATTCAGGACCTTTACAAAACATGGCATGACCCCCAGAGAGGCACAGTAACAGGAGGCA
TGGTCAGGGAACTCTTAATATCCTTTAGGAAGGCCACGGGACAGAAACCATTGAGGATAA
TTTTCTACCGGGATGGCGTTAGTGAAGGCCAATTCTACCAAGTTCTCCTTTATGAGTTGG
ATGCTATCCGTAAGGCTTGTGCATCCCTAGAACCAAATTACCAACCTCCTGTAACGTTTG
TCGTCGTTCAAAAGCGTCACCATACAAGACTGTTTGCAAACAATCACAAAGACAGAAGTA
GCATGGACAAAAGTGGAAACATTTTACCTGGAACTGTTGTTGATTCGAAGATATGCCACC
CAACGGAGTTTGATTTCTACCTCTGTAGTCACGCTGGAATCCAGGGTACAAGTAGGCCAG
CTCACTACCATGTCCTCTGGGATGAGAACAACTTCTCAGCAGACGAAATGCAGACGTTGA
CAAACAACCTTTGCTACACTTACGCACGGTGCACGCGCTCTGTTTCCGTCGTCCCACCTG
CATATTACGCGCATCTGGCTGCATTCCGGGCGCGGTTCTACATGGAGCCGGAGCTGTCGG
AGAACCACACGTCGAAGAGCTCCAGTGGGACGAATGGTACCTCCGTGAAGCCTTTGCCCG
CTGTGAAAGAGAAGGTGAAGAGGGTGATGTTCTACTGTTGACAGAGGGACTAGTTTTAAC
TACTCACAGTTATGTGCCTAACACTGTAGAATTTAGCAGTAGAGGGTTAGGTTAGATTTC
TCCTGGAAAGGAAGAGAAGAGAAGAGAAGAACATTCTGCATTTGGACCCCTGAACTATCT
CTCGACTGCCTCTGTAAAGTACCAGAAAGCATGTATAATAGTAGTACTTGTCTGGGCC

Homology of Contig U35_24200 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g39640.1	974	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi1g36907.1	954
Arabidopsis v10	AT5G43810.1	988	\| Symbols: ZLL, PNH, AGO10 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr5:17611939-17616562 FORWARD LENGTH=988