barSeed - Barley Seed Development Database

Probe CUST_36974_PI390587928

Source Contig U35_24201

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36974_PI390587928	Hv_44K_v2	TGGAAGTCCACGGAGCTCGAGATCCAGGCGCTGCTCGACAAGCTGCAGGACGTTAACGAC	324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367560	1171	3e-21	303 - 362	97	58 / 60	plus	ABC12134 ABC38902
Harvest21	ABC19269	393	3e-25	325 - 384	100	60 / 60	plus
Harvest35	U35_24201	393	3e-25	325 - 384	100	60 / 60	plus

Contig Sequence (393 bp)

>U35_24201 393 Hv_44K_v2
TTCTCCCCTCCAACCTCCGCGTCGTCGGAAACCCAAATCCTCCTCCCAACTCATCAGATC
ACGCGAGCAGGGGGGGCCGAACCGGATCGGGCGCGGCGGAGGAAGTGGACGGCGATGATG
CACGGCGTGGGGCCGTCGGACGACGCGGCGGCGGCGGCGGCGCTGGAGCTGCAGGAGTCC
GGCTGGGAGGAGCTGCGGCGGGAGGCGCGGAAGCTGGAGGGGGACCTGGACGTGAAGCTC
TCCTCGTACGCGCGCCTCGCCGCGCGCTCCTCCTCCGCCTCGGCCTCGGCCTCGGCGGCT
TCCCCCACCGCCGACCGCTCCTCCTGGAAGTCCACGGAGCTCGAGATCCAGGCGCTGCTC
GACAAGCTGCAGGACGTTAACGACGCCATGAGC

Homology of Contig U35_24201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None