- Probe CUST_36971_PI390587928
- Source Contig U35_24204
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36971_PI390587928 | Hv_44K_v2 | AGAGCAACCATGCATGAAGAATCAAATAGCCTCTTCAGCTTTTCAGTCTTGCTGGATGAT | 863 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19686.4 | 5366 | 7e-23 | 5014 - 5073 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_19686.10 | 4001 | 7e-23 | 3917 - 3976 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_19686.2 | 5010 | 7e-23 | 4714 - 4773 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_19686.5 | 7649 | 7e-23 | 4749 - 4808 | 98 | 59 / 60 | plus | ABC09099 |
| MLOC | MLOC_19686.6 | 7809 | 7e-23 | 4909 - 4968 | 98 | 59 / 60 | plus | ABC09099 |
| MLOC | MLOC_19686.11 | 1106 | 3e-21 | 1050 - 1106 | 98 | 56 / 57 | plus | None |
| JLOC1 | JLOC1_13643.6 | 4066 | 4e-23 | 1165 - 1224 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13643.5 | 7465 | 4e-23 | 4564 - 4623 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13643.4 | 7426 | 4e-23 | 4525 - 4584 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13643.3 | 7430 | 4e-23 | 4529 - 4588 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13643.2 | 7650 | 4e-23 | 4749 - 4808 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13643.1 | 7682 | 4e-23 | 4781 - 4840 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC20910 | 923 | 3e-25 | 864 - 923 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24204 | 923 | 3e-25 | 864 - 923 | 100 | 60 / 60 | plus |
Contig Sequence (923 bp)
>U35_24204 923 Hv_44K_v2 GCAAGGCTCAACATGACACGAGAAGCTTGGCCTATTGGTTATCCAACTTATCGACATTAT CAGTTCTCCTGCAACGCTCTTTTAGAACCACTAGGACAGCAACCTCGATTCCATCTAGAC GAAAAATGTCGTACGAGAGGATTTATCAAGCTAGTCAAGCATCAAATAGTGGGCTTGCTT ATTTCAGTGGTCAATTATTGGATGAACCTGGTGCATCGCACCAAGTTGATCCAAAATATC CAGCTTTGCTCTTCAAGCAGCAGCTTGTGGATCTGATTGAAAAGGTGTATGGGTTGATAA GTGACAAATTGAAGAAGGAACTAAATCCATTACTTGAGCTGTGCATTCAGGATCCAAGAA CTTCTCAAGCAAAGGCCTCAGTGGCATCTGCTGGTGGCTTGGGCCAACACAACCAACTCA CGCATTGGCTGAGCATTGTGAAAATCCTCAGCAACTACTTGTATCTGCTAATAGCAAACT ATGTTCCAACAATTTTGGTCCACAAGTTACTAACCCAAATGTTTTCTATGGTGAACGTCC AATTATTTAACAGACTCCTTCTGCGCCGTGAGTGCTGTTCATTTAGCAACGGGGAACATA TTAGAGCCGGATTAGCCCAACTAAAACATTGGTGCAATGATTTTGCTCAAGAGCTTGCAG ATTCAGCCTGGGAAGCACTGAGGCATATAAGACAGGCGGCCGATTTCCTGGTCATTTCCC GAAAGCAAATGAGGACATGGAGAGAAATACGCAATGATATATGTCCGGCTCTGAGCTTAC AGCAGCTAGAGAGAATAGTTGGTATGTACTGGGACGACATGAACGGCACAAACGTACTTT CAGCAGAGTTCGCATCAAGCATGAGAGCAACCATGCATGAAGAATCAAATAGCCTCTTCA GCTTTTCAGTCTTGCTGGATGAT
Homology of Contig U35_24204 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g51630.2 | 368 | 2e-142 | protein|XIE, putative, expressed |
| Brachypodium v1_2 | Bradi2g18520.1 | 2135 | 6e-166 | |
| Arabidopsis v10 | AT5G20490.1 | 1545 | 6e-84 | | Symbols: XIK, ATXIK, XI-17 | Myosin family protein with Dil domain | chr5:6927064-6936825 REVERSE LENGTH=1545 |