barSeed - Barley Seed Development Database

Probe CUST_36965_PI390587928

Source Contig U35_12230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36965_PI390587928	Hv_44K_v2	ATTATGAACGCATACCCTTTTGTGCCATTATCTGGCGTGAGTGAGAGTGATGAGTGTGTG	979	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.358	1.934	1.138	0.688	0.229	0.237
Raw	832.909	1073.776	546.611	526.568	63.500	69.084

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357148	1311	2e-24	1198 - 1257	100	60 / 60	plus	ABC01523 ABC22332
MLOC	MLOC_55407.2	1219	3e-21	100 - 153	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.3	1989	3e-21	100 - 153	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.13	1178	3e-21	56 - 109	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.4	2648	3e-21	82 - 135	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.10	1918	3e-21	65 - 118	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.11	1707	3e-21	65 - 118	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.12	1156	3e-21	65 - 118	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.16	1649	3e-21	48 - 101	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.17	1528	3e-21	48 - 101	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.18	1739	3e-21	48 - 101	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.14	2285	3e-21	55 - 108	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.15	2097	3e-21	55 - 108	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.1	1427	3e-21	100 - 153	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.9	1320	3e-21	69 - 122	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.7	1169	3e-21	70 - 123	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.8	1200	3e-21	70 - 123	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.6	1586	3e-21	70 - 123	100	54 / 54	minus	ABC22332
MLOC	MLOC_55407.5	1211	3e-21	70 - 123	100	54 / 54	minus	ABC22332
JLOC1	JLOC1_35740.16	1938	2e-21	1735 - 1788	100	54 / 54	plus
JLOC1	JLOC1_35740.15	1270	2e-21	1067 - 1120	100	54 / 54	plus
JLOC1	JLOC1_35740.14	1236	2e-21	1033 - 1086	100	54 / 54	plus
JLOC1	JLOC1_35740.13	1799	2e-21	1596 - 1649	100	54 / 54	plus
JLOC1	JLOC1_35740.12	1824	2e-21	1621 - 1674	100	54 / 54	plus
JLOC1	JLOC1_35740.11	1236	2e-21	1033 - 1086	100	54 / 54	plus
JLOC1	JLOC1_35740.10	1792	2e-21	1589 - 1642	100	54 / 54	plus
JLOC1	JLOC1_35740.9	1213	2e-21	1010 - 1063	100	54 / 54	plus
JLOC1	JLOC1_35740.8	1244	2e-21	1041 - 1094	100	54 / 54	plus
JLOC1	JLOC1_35740.7	1823	2e-21	1620 - 1673	100	54 / 54	plus
JLOC1	JLOC1_35740.6	1576	2e-21	1373 - 1426	100	54 / 54	plus
JLOC1	JLOC1_35740.5	2175	2e-21	1972 - 2025	100	54 / 54	plus
JLOC1	JLOC1_35740.4	2183	2e-21	1980 - 2033	100	54 / 54	plus
JLOC1	JLOC1_35740.3	2158	2e-21	1955 - 2008	100	54 / 54	plus
JLOC1	JLOC1_35740.2	1579	2e-21	1376 - 1429	100	54 / 54	plus
JLOC1	JLOC1_35740.1	1749	2e-21	1546 - 1599	100	54 / 54	plus
Harvest21	ABC22332	1080	3e-25	42 - 101	100	60 / 60	minus	ABC22332
Harvest35	U35_12230	1080	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_12230 1080 Hv_44K_v2
GCTTGCGTGCTCCTAAAGCCGCGACCCCCGACGCCATAATCATCCCTGAACGATCTCAAG
ATCTTCTCTCCCCCCCCTCACGAGCGAGAGAGGTGAGAGACCAAGGATGGGCGGCGGCAA
CGGCAACCCCAAGGACTTCGGCGCCGCCGCCTACTGGGACGCCCGCTACTCCTCTCCCTC
CACCGGCGGCAAGGGCGGCGTCGGCGGGTTCTTCGACTGGTACCAGTCGTACCCGGCGCT
CCGGCCGCTCCTCCGCGCCTGCGTGCCCGCCTCCTCCCGCGTCCTCATGCTCGGCTGCGG
CAACTCCCTTCTGTCGGAGGACATGGTAAAGGATGGTTACCAGAACATAGTAAACATTGA
CATCTCATCCGTTGTAATCGAGCATATGAAAGAGAAACACATGGATATCCCACAGCTTAC
ATATATGCAGTTGGATGTCAGAGATATGAGCTTCTTTGGGGATGGATCATTTGATTGTAT
CATCGACAAAGGAACCTTGGATGCTATGATGTGTGGCGATGATGCCCCTCATGGTGCTTA
CAAAATGCTAACAGAAGTAGCAAGGCTTATGAGGCCTGGTGGGATTTACATATTGATAAC
ATATGGTGCTCCTAAGGAACGTCTGACACTTCTGAACCAAGTCCGATGCCATTGGGATGT
TGAGCTTTACATTATGCCAGCGACACCTGAATACCAGATGAAATGGAGCAACGGTGCTGC
ACACGCCATGATGGAGAAAGTTGCACTGACAGTGGATGGTCAATTACCACCTGACTACGT
TCTCAAGGATCCAGAGTCACATTTCATTTATGTTTGTTACAAGACAGATATAGTGACTGA
AGATAATTCCATGGTTGCTGGTCAAGATGATGCCATGTTTTAATAGAGCCCGACCACAAT
GCGCGAATTAATTATTGCCATGACTCCAAAATGATTTGCTTCTGATCATTGGTTTGAATG
GTAAAGATTGTTACCATTGATTATGAACGCATACCCTTTTGTGCCATTATCTGGCGTGAG
TGAGAGTGATGAGTGTGTGCTTTGTGANAGTTGAAGATNTTAAGAAATATAGTTGTTATG

Homology of Contig U35_12230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32590.1	266	2e-121	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g26520.1	261	3e-136
Arabidopsis v10	AT3G60910.1	252	2e-77	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:22501727-22503182 FORWARD LENGTH=252