barSeed - Barley Seed Development Database

Probe CUST_36963_PI390587928

Source Contig U35_12232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36963_PI390587928	Hv_44K_v2	ATCAGAATTGATAATCTTTCTGGCCATCTTGGCTCACTGTTGCTGTGCCCATCCCCTAAT	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12326.2	2762	2e-24	1531 - 1590	100	60 / 60	plus	None
MLOC	MLOC_12326.1	1840	2e-24	635 - 694	100	60 / 60	plus	None
JLOC1	JLOC1_8271.1	1974	8e-25	634 - 693	100	60 / 60	plus
Harvest21	ABC26135	633	3e-25	532 - 591	100	60 / 60	plus
Harvest35	U35_12232	633	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_12232 633 Hv_44K_v2
CTCGTTTCGGGTCAGGAAAGTCTGCGCGCGAGCGCGTGTGTGTCCAGGAAAGGTTCAAGA
TCGCGTCTCTCGGATCGCGGAAAGGCCACCCACCCGCCCACCAGACCCCGCGGGGAAGAG
GAAAAAAAAATCGGGAGATCGCCGTTGGATCCTTGTTTTTGTTCTGTGGTGCGAGTGCGG
ATCGGGGGAGTTCTGTGGCGAGTGAAGGGCGCGCGAGGGATCCGGGAGGTCGTTTGCGGA
GGGATCTGATCTGACTAGTGAGGCGGAGGTATGGTTGCCGGGCCGGAGGTCATGCATCAG
GTCGTCCCGATGCTGGAGGCGTCGTTCCGCCGGTTCCCCGTCAAAGGGGTCGACGAGGTC
GTCGTCGGGGTCGGGGTGTCGACGCCGCCGCCGGTCGATTCGCCATCGCAGGTCGACCTC
CAGGTTCCCGATCTGGTTAAGACGCCTTTGGAGACGCTACAGTTTGTCCCAAAGATTAGA
TCTGGTAGCTTTGCTGATATTGGACCTAGGCGGTACATGGAAGATGAACATATCAGAATT
GATAATCTTTCTGGCCATCTTGGCTCACTGTTGCTGTGCCCATCCCCTAATGCCTTCTAT
GGGGTTTTTGATGGCCATGGAGGTTCAGATGCA

Homology of Contig U35_12232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None