- Probe CUST_36956_PI390587928
- Source Contig U35_24210
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36956_PI390587928 | Hv_44K_v2 | TTAGGCATTACACGAACCAGTAATTGTTTGTGTTTGGTTACTACTGAAAGAATGTTGTAC | 457 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69714.8 | 1995 | 2e-24 | 1849 - 1908 | 100 | 60 / 60 | plus | ABC38776 ABC39830 |
| MLOC | MLOC_69714.10 | 2916 | 2e-24 | 1453 - 1512 | 100 | 60 / 60 | plus | ABC29973 ABC38776 ABC39830 |
| MLOC | MLOC_69714.3 | 1569 | 2e-24 | 1382 - 1441 | 100 | 60 / 60 | plus | ABC38776 ABC39830 |
| MLOC | MLOC_69714.6 | 1990 | 2e-24 | 1906 - 1965 | 100 | 60 / 60 | plus | ABC38776 ABC39830 |
| MLOC | MLOC_69714.4 | 2004 | 2e-24 | 1817 - 1876 | 100 | 60 / 60 | plus | ABC38776 ABC39830 |
| MLOC | AK365737 | 1715 | 7e-23 | 1593 - 1652 | 98 | 59 / 60 | plus | ABC38776 ABC39830 |
| JLOC1 | JLOC1_46215.4 | 1581 | 8e-25 | 1371 - 1430 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46215.3 | 1935 | 8e-25 | 1725 - 1784 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46215.2 | 1645 | 8e-25 | 1435 - 1494 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46215.1 | 1510 | 8e-25 | 1300 - 1359 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39830 | 512 | 3e-25 | 312 - 371 | 100 | 60 / 60 | plus | ABC39830 |
| Harvest21 | ABC38776 | 625 | 1e-23 | 109 - 168 | 98 | 59 / 60 | minus | ABC38776 |
| Harvest35 | U35_24210 | 658 | 3e-25 | 458 - 517 | 100 | 60 / 60 | plus |
Contig Sequence (658 bp)
>U35_24210 658 Hv_44K_v2 GATATCGATTCAGGCTGCAATACTTTGGTCAATTTTGAAGCCATGCGATTGCAAACTAGC AAGCCACTACAACTAGCTGTCACTGATGATCCATCACTTGTTTTCATTCCATGCATGTCA AGCATCAAGGCATACAATACATGGTCTGGTACGACATTTCAAACATTCCGTGGGCATTAT GACCATGTAAATTGCTGCTACTATAACTCACAAGACCAAGAACTTTATACTGGTAGCAAT GATCGACAAATTCTCGTGTGGTCTCCATCGACTCCTGTTTTGACTGAAATGGAAGACGAT GACAAGCGGCAAGAGGGTTTTGCAGCTGATGAGGATAACTGGAGTGACTGAGAACTTCCG AGTTTTTTGTGGGAGAGAACTTGAGTTGATCATGTGTATATACGAGGTTACTAACAATAT TGACAAAAGTGATGCCGAAATAAAGTCAGGGTTCTTGTTAGGCATTACACGAACCAGTAA TTGTTTGTGTTTGGTTACTACTGAAAGAATGTTGTACATTAGGATTTTTTTTTTTTTTGA AGATTTAGTTCATTCAAACTTATGTATTCAGGCATCATCACAAAAAGATAAGAGTATTAT GTATGGTTCACCAACTGTTATTTATGTACCTTGGTCTTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_24210 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g20430.1 | 372 | 3e-68 | protein|WD domain, G-beta repeat domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g55470.1 | 590 | 1e-66 | |
| Arabidopsis v10 | None |