barSeed - Barley Seed Development Database

Probe CUST_36952_PI390587928

Source Contig U35_24215

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36952_PI390587928	Hv_44K_v2	AACAAGCAGTGTCGTGTCGCCTCGACAAAAGCCATTGCCGTGCCGTCTCGTCTCCAAAAG	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370974	1813	2e-24	29 - 88	100	60 / 60	plus	ABC09397 ABC39299
MLOC	MLOC_74872.1	232	2e-24	3 - 62	100	60 / 60	plus	None
Harvest35	U35_24215	481	3e-25	30 - 89	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_24215 481 Hv_44K_v2
GTGCCAAGCCAATTCATATCCTCTGCAGCAACAAGCAGTGTCGTGTCGCCTCGACAAAAG
CCATTGCCGTGCCGTCTCGTCTCCAAAAGCACGGGGGAATGGCTTCCTCAGCACCGGCGC
CGGGCGAGAAAGCGCACGCCGTGTGCCTGCCGGCGGCCGCGCAGGGGCACATCATCCCCA
TGCTCGACGTCGCCAAGATGCTCCACGCCCGCGGCTTCCACGTCACCTTCGTCAACACCG
ACTACAACCACGCCCGCCTCGTCCGCTCCCGCGGCCCCGCCGCGGTGGCCGGCGTCCCGG
GCTTCCGCTTCGCCACCATCCCGGACGGCCTGCCGCCGTCCGGCGACGACGTCACGCAGG
ACATCGCGGCGCTGTGCAGATCCACCACGGAGACCTGCCTGGGGCCCTTCCGCCGCCTCC
TCGCGGACCTCGACGCAGGCGGCCCGCGCGTGACCTGCGTCGTCTCCGACGTCGTCATGG
A

Homology of Contig U35_24215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51930.1	486	5e-56	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g58670.1	493	1e-59
Arabidopsis v10	None