barSeed - Barley Seed Development Database

Probe CUST_36950_PI390587928

Source Contig U35_24217

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36950_PI390587928	Hv_44K_v2	CTGCGAAAATCAATAGGTGCATTCTCCTATCTGAAACGTTTTGGTTTGAGCAAGTTGTAA	703	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.692	2.393	1.129	0.743	0.525	0.683
Raw	35.906	49.692	20.989	21.269	2.759	6.611

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36627.1	3408	3e-22	3295 - 3353	98	58 / 59	plus	None
JLOC1	JLOC1_23609.1	3392	1e-22	3310 - 3368	98	58 / 59	plus
Harvest35	U35_24217	778	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_24217 778 Hv_44K_v2
AACCTGAAAACACCGGGTACTATGTCCTTCTTGCCAACATATATGCTGAGGCCGAGAGAT
GGGAGGCTGTAAGGAAGCTCAGGAACAAGATCGGTGGTCGAGGGCTCCGGGAGAAAACTG
GCTGCAGCTGGATTGAGGCCAGGGGTAGGGTTCAGGTCTTCGTCGCGGGCAACCGGAATC
ATCCACAAGGGGCGAGGATCGCGGAGTTCCTGGATGAAGTTGCCAGAAGAATGCAGGAAG
AAGGCCATGACCCGAAGAAGAGATATGCTCTGATGGGCGCTGATGACGCAGTAAACGGCG
AATCACTATGCGGTCACAGCTCGAAGCTCGCCGTCGCCTTTGGGGTGTTGAATCTGTCGG
AAGGGCGCCCGATCCGCGTGACAAAGAACTCGAGGGTTTGCACTCACTGCCACGAGGCCG
CCAAGTTCATATCCAAGATGTGCAGCAGGGAGATCATATTGAGGGATTCCAACAGGTTCC
ATCATTTTGAACAAGGCAGGTGCTCTTGCAGAGGTTACTGGTAACAGCACCAGTGCTATG
TGATAGTAATTAGTGAATCGGCTTGCCAGCTGCAGTATGTTCATAGCTGTTGCTAGAAAT
ACGAGCATGTAATATCTCTGTATCACAATCAAAACGTATGGGGAAATGATTTTGGCCCAG
ATATTTTCGCGCAGGATTCTCCCACAGAATCTGCGTTGGGATCCTGCGAAAATCAATAGG
TGCATTCTCCTATCTGAAACGTTTTGGTTTGAGCAAGTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10800.1	1083	3e-105	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi2g06450.1	1083	6e-107
Arabidopsis v10	AT4G18750.1	871	1e-68	\| Symbols: DOT4 \| Pentatricopeptide repeat (PPR) superfamily protein \| chr4:10304850-10307465 FORWARD LENGTH=871