- Probe CUST_36931_PI390587928
- Source Contig U35_42393
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36931_PI390587928 | Hv_44K_v2 | AATCACGAAGACAATGCCCAACCAAGTGATGACTCCATTGATGCAGTAGATGAGGAAGCT | 497 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.074 | 1.073 | 1.752 | 1.305 | 0.662 | 0.481 |
| Raw | 365.434 | 521.702 | 791.820 | 868.916 | 165.223 | 134.693 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376547 | 2923 | 2e-24 | 1377 - 1436 | 100 | 60 / 60 | plus | ABC15041 ABC44002 |
| MLOC | MLOC_44134.3 | 1835 | 2e-24 | 457 - 516 | 100 | 60 / 60 | plus | ABC15041 ABC44002 |
| MLOC | MLOC_44134.1 | 2171 | 2e-24 | 566 - 625 | 100 | 60 / 60 | plus | ABC15041 ABC44002 |
| MLOC | MLOC_44134.2 | 2067 | 2e-24 | 484 - 543 | 100 | 60 / 60 | plus | ABC15041 ABC44002 |
| JLOC1 | JLOC1_28573.1 | 2811 | 8e-25 | 1232 - 1291 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38040 | 702 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42393 | 702 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus |
Contig Sequence (702 bp)
>U35_42393 702 Hv_44K_v2 GGGACAAGGTGCCCAATGAGTCGGTCGCATCCAAGAAACGGGCTGAGAAGGAGAGGAGGG CTCAGCTTGAATCCATCCACGCCGAGTCGCAGAGGCTGCTGCGAGAGACAAGAAAGGCAT CATTTAAGCCAGTTGCAGAGCCAGTGTACAAACCCATCTCGTCAGTCCTGGAGAAGATCC GCCTTCGGAAGCTGGAGATTCAGAAAATGTCAAATACTCCTGTTGAAGAAGAAGAAGAAG AGGAGGAAGAAGATTCCTCTTCAGAATCTGAGAGTGATCCCGCTGAACAGCCAGCCATGC CTGAGGTTAAGGAAGTGGGCTCAGACGACAAAGATTTAAAGAATGATGATGTTGACAAGG AGGTTGGAGCAAATGCTGGTGACCTGAATGACGGCGCCAGTCTCCCTGAGGACGAGGATG CTGTGATTAGTGAGAAGGATCTTAATAAATGTGGTAGCAAATCTCCAGACAAGCAACTTG TTGATAATTCTCAAGATAATCACGAAGACAATGCCCAACCAAGTGATGACTCCATTGATG CAGTAGATGAGGAAGCTCATCTGCCTCCCTCCTCAAGCCCTACCAAGAATACAGATGACA GTTCTTCAGAAGATGAAGAAGAAGAGGATGAGGAAGAAGAAGATAATGACAAGGAGAACA TCTGTCCAGGCATTCAGCANAATGATGTAAATACCCATCAAC
Homology of Contig U35_42393 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g59480.1 | 799 | 9e-56 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g04527.1 | 792 | 2e-69 | |
| Arabidopsis v10 | None |