- Probe CUST_36925_PI390587928
- Source Contig U35_42399
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36925_PI390587928 | Hv_44K_v2 | CATGGATATGGCCGTGTAAAACCTGATGTTGTCGCATACAGTCGTGATATAATGGGTTCT | 619 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.532 | 1.020 | 1.513 | 1.583 | 0.836 | 0.725 |
| Raw | 8.276 | 25.908 | 32.052 | 50.192 | 10.248 | 9.264 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357070 | 3588 | 2e-24 | 1251 - 1310 | 100 | 60 / 60 | plus | ABC20675 |
| MLOC | MLOC_54024.6 | 1468 | 2e-24 | 679 - 738 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_54024.3 | 3468 | 2e-24 | 2674 - 2733 | 100 | 60 / 60 | minus | ABC20675 |
| MLOC | MLOC_54024.4 | 3335 | 2e-24 | 2562 - 2621 | 100 | 60 / 60 | minus | ABC20675 |
| MLOC | MLOC_54024.5 | 3340 | 2e-24 | 2562 - 2621 | 100 | 60 / 60 | minus | ABC20675 |
| MLOC | MLOC_54024.1 | 3340 | 2e-24 | 2536 - 2595 | 100 | 60 / 60 | minus | ABC20675 |
| MLOC | MLOC_54024.2 | 3335 | 2e-24 | 2536 - 2595 | 100 | 60 / 60 | minus | ABC20675 |
| JLOC1 | JLOC1_34755.4 | 3213 | 8e-25 | 727 - 786 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34755.3 | 3218 | 8e-25 | 732 - 791 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34755.2 | 3099 | 8e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34755.1 | 3138 | 8e-25 | 545 - 604 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38053 | 679 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42399 | 679 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus |
Contig Sequence (679 bp)
>U35_42399 679 Hv_44K_v2 GCTCTGGTGGTCGGAGGCGGAAGCTTCAAATGCGGAGATCACATGTGACATCTCTTTTTG GAGCTGCACAGCTATGGGAAAGAGGCTTCACTGGTAGGAAAGTCAAAATGGCCATTTTTG ACACTGGTATTCGGGCGGACCACCCACACTTCCGTAATATTAAGGAGCGCACAAATTGGA CAAATGAAGACACATTAAATGACAACCTTGGTCATGGAACATTCGTAGCTGGAGTGATTG CTGGTCAAGATCCAGAATGTCTTGGATTTGCACCAGACACTGAGATATATGCATTTCGAG TGTTCACAGATGCTCAGTGCAGATATCCTACACATCATGGTTCTTGGATGCATTTAATTA TGCTATGGCTACTGGTATGGATGTATTGAATTTGAGTATTGGTGGACCTGATTACCTGGA TCTCCCCTTTGTGGAAAAGGTCTGGGAGCTCACAGCAAACAACATTATTATGGTATCAGC TATTGGAAATGATGGTCCTCTCTATGGCACATTAAATAACCCAGCTGACCAAAGTGATGT CATCGGCGTTGGTGGTATTGATTACAATAACCACATAGCTTCATTTTCCTCTAGAGGCAT GACTACCTGNGAACTTCCCCATGGATATGGCCGTGTAAAACCTGATGTTGTCGCATACAG TCGTGATATAATGGGTTCT
Homology of Contig U35_42399 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g06802.1 | 1904 | 2e-70 | protein|retrotransposon protein, putative, unclassified, expressed |
| Brachypodium v1_2 | Bradi1g48447.1 | 1047 | 6e-119 | |
| Arabidopsis v10 | AT5G19660.1 | 1038 | 8e-108 | | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038 |