barSeed - Barley Seed Development Database

Probe CUST_36918_PI390587928

Source Contig U35_1307

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36918_PI390587928	Hv_44K_v2	ATGGTTTTGTATAAATAAAACATTGTTACATGGGGCAAGAGTCCCTGGTTTCCTTGTCAA	986	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16379.1	1162	2e-23	281 - 338	100	58 / 58	minus	ABC02778 ABC07997
MLOC	AK360886	990	3e-22	933 - 988	100	56 / 56	plus	ABC07997
JLOC1	JLOC1_11273.1	1297	1e-23	721 - 778	100	58 / 58	plus
Harvest21	ABC07997	1040	4e-24	965 - 1022	100	58 / 58	plus	ABC07997
Harvest35	U35_1307	1061	3e-25	987 - 1046	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_1307 1061 Hv_44K_v2
GAAGCTCGCGCCGCGAAGGTTTCTTTAATCCCGTGAAGAAACACACAAGAAGGGAGGAGA
GGCAGCACGCAATCAGCCAGCCCAGCCAGCCGCTCGCCCTCGCCGCCGCCCAATTGACCC
GATCGAGGAGCCTCCCAGGCCCAGCGAAGGGGCAGAGGCAGCCATGGCCACCGCCAACCT
GTCCAGCGTGGTGGTGGCGGTCGACGGCAGCGAGGAGAGCATGAAGGCGCTGCGCTGGGC
GCTCGACAGCCTGCGCCTCCGCCCCGACGGCGCGCTCGTCGTGCTCCACGTCCAGCCGCC
GCCCGGCATCGCCGCGGGCCTCAACCCCGGCCCCATCCCCTTCGGCGGCCCCAGTGTGGC
GGAGGTGCCGGCGTTCACGCAGGCCATCGAGTCGCACCAGCGGCGGATCACGGAGGCGAT
CCTGGAGCACGCGCTCAAGATTTGCTCCGACAAGAATGTGGAGGTGAAGACGCAGGTGGT
GGTGGGGGATCCCAAGGAGAAGATCTGCGAGGTGACGGCCGAACTCAAGGCCGATCTGCT
CGTCATGGGGTGCCGTGCTTTTGGCCCTGTCAAGAGGATGTTCTTGGGCAGCGTGAGCAA
CTACTGCATCAACAGCGTCGGCTGCCCCGTCGTCGTGATCAAGGGCACCTGACCCATCCT
CCACCAACAAACATTCGTTGTTGCGTTCCGCATCATGTTTTCTGAGGTTGCCACCGTGTT
GTTGTGTCCACTCCTGTGCAAATTCACTGCACACTTCCAACACTATCTATGGTCTATTGG
TTTATATGTTATCATTGACGTTGTTTGCTAGTGCTTGGTTGGATGAGGCCGAAGAACTGC
TCAGGTCTGTACATTCCGTGCGTGGAGATTGCCAAATTGGTTGGTTGTGGGATCCGTGGA
AATAAGCCTGCACACCGTGCACTCTGTTTTGTAAATTGATCATTGTTGTATATTATTATC
AGCTAAAACACGGTGCCATGGGGCACATGGTTTTGTATAAATAAAACATTGTTACATGGG
GCAAGAGTCCCTGGTTTCCTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52314.1	163	9e-100	protein\|BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed
Brachypodium v1_2	Bradi3g58240.1	165	4e-98
Arabidopsis v10	AT1G09740.1	171	5e-70	Adenine nucleotide alpha hydrolases-like superfamily protein \| chr1:3154603-3155834 FORWARD LENGTH=171