barSeed - Barley Seed Development Database

Probe CUST_368_PI390587928

Source Contig U35_9356

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_368_PI390587928	Hv_44K_v2	CATGAATGAACTGCCATTGTTTGGCCAAGGAAATATAGAATACAACAAGATTTCAGCAAA	1371	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362737	1561	2e-23	1438 - 1495	100	58 / 58	plus	ABC40172
MLOC	MLOC_21294.1	553	3e-21	500 - 553	100	54 / 54	plus	ABC40172
JLOC1	JLOC1_14780.1	669	1e-23	516 - 573	100	58 / 58	plus
Harvest21	ABC40172	644	4e-24	21 - 78	100	58 / 58	minus	ABC40172
Harvest35	U35_9356	1445	3e-25	1372 - 1431	100	60 / 60	plus

Contig Sequence (1445 bp)

>U35_9356 1445 Hv_44K_v2
GACTCCTATAGGGCGAATTGGGCCCTTCTCAAAATGCTCGAGCGGCCGCTGGTACTAGCT
CGTTGGAATCATCGTCACTGTCGTCGTTGCTGAAATCCTCAACGGCGGCAAGGGCACTGG
TGGCTGGGTCGGCTGGTTGATCTTTTTCTACACCTACCTGGCAAACTCGCTCTTCCTGAT
GCGGTCGCTCAAGTATGTCCTTCTCCCTGAGACTGCAGCTGGCGTTAGTGGCGGACCTAT
GCAGACGGACTCCCGGGCCAAGCGCAGCCAACGCACCAAGTTCCTCTTTATGTACTCCTA
CTTTGTGCAGCTCTTCTTTATGTGGATTCTCACCAGGGCGTAAACGGCAATTTGGACTTG
AGCAAGACAGCTATCATGTCTAAGATATTCATTCACAAAGGAGTTTACGAGACCTGGTGG
TGTCTGGTGGATACAAAAGTTGAGTCAATAAAGGAATGAAGATGGTAATGAGGGATGACT
GGGGGATGTACGATAAATATTTGGGTTGAATGATGAAGCATCAAAGAGACGTCAAGCTAT
TCGTTCGATGATATTATAGAATTGTTTACCTACTGCCTGAATTCTTGAGCGGCCGCTCCT
ATGTATACAACTCTGAGGCGCACAACAGTAGCATTTACAATGACAATGGAGTATTTCTTG
GCAAAGCAGAAACACACACCACCTATAATCGGCAGTGTGGCTTTGATTGTATTTGGAGCA
TTTATTGCTGGGGCTCGAGACCTATCATTTGATGCTCGTGGGTATGCCATTGTCTTTGTC
GCCAATATAACTACAGCTGTTTATCTTGCAACTATAAATCGTATTGGAAAATCTAGTGGG
CTGAATAGCTTTGGCCTGATGTGGTGCAATGGACTTGTTTGTGGACCTGCAGTACTGTTC
TTGACATATATTCAGGGCGACCTCAAGACAACTATTGAATTTCCTTACCTTTATTACCCT
GGATTTCAGGTGGTGCTGCTATTTTCATGTATACTAGCATTTCTATTGAACTACACCATC
TTTTGGAATACTATCTTGAATTCTGCACTCACACAGTCAATGTGTGGGAATTTGAAGGAT
TTCTTCACTGTTGGACTTGGCTGGGTACTCTTCGGTGGGCTTCCTTTTGATCTGCTTAAT
GTCATCGGCCAAGGGCTTGGCTTTGTTGGCTCAGGCATGTATGCTTACTGCAAGATCAAA
GGAAAATAGATATTGATGTTTAAGGGACTAAAGGGGAGTAGATATTGATATGGGCAGTAT
GGGCTTAACCAAAGTAGCGTTCATTATGCTGTTTGCTCCTGCATATGGGAGAGAAAATTT
TGTAGGTTTTCCTGGGTGTACATTTATAAACTCCAATTCTCCTGGGTAGAACATGAATGA
ACTGCCATTGTTTGGCCAAGGAAATATAGAATACAACAAGATTTCAGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_9356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40030.1	347	2e-135	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi3g48680.1	345	1e-136
Arabidopsis v10	AT4G32272.2	359	4e-97	Nucleotide/sugar transporter family protein \| chr4:15577195-15579689 REVERSE LENGTH=359