barSeed - Barley Seed Development Database

Probe CUST_36878_PI390587928

Source Contig U35_1350

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36878_PI390587928	Hv_44K_v2	GCTGTTATTCTGTTTTACAACCTGAGGACGATACCGATCAAATATTCATTTAAGCCAAAA	1479	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.803	1.858	1.165	0.693	0.281	0.279
Raw	63.363	96.585	55.535	53.370	6.462	7.303

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7922.1	3432	4e-23	3373 - 3429	100	57 / 57	plus
Harvest35	U35_1350	1552	3e-25	1480 - 1539	100	60 / 60	plus

Contig Sequence (1552 bp)

>U35_1350 1552 Hv_44K_v2
AGTGAGGCCGAGCTGGCAGAGCCAATTATACGCCTTCTTCCTGTTGCGCTTGGCCTTCTA
TATCTTGGAAAGCAGGAAAGCGTCGAGGCTACTGCGGAGGTTTCCAAAACATTTGATGAG
AAGATCAGGAAATATTGTGACGTAACACTGATGTCCCTTGCATATGCTGGAACAGGAAAT
GTGCTCAAGGTTCAGAAACTTCTTGGTATTTGCTCACAACATCTTGAGAAAGGCGAAACA
CACCAAGGCCCAGCTGTCCTTGGAATTGCTCTTATTGCCATGTCTGAAGAATTAGGAGCT
GAAATGGCTGTACGATCACTTGAACGTCTTTTACAGTATGGCGAGCAGAATATCAGAAGA
GCAGTTCCTCTTGCTCTTGGTATCCTCTGTATTTCGAACCCCAAGGTAAATGTAATGGAC
ACACTGAGCAGATTGAGTCATGATGCAGATGCTGATGTTTCAATGGCTGCGATAATCTCA
TTGGGTTTGATTGGTGCTGGTACAAACAATGCCAGAATAGCTGGTATGCTTCGTAATCTT
TCGAGTTATTACTACAAAGAGGCTGCTCATCTATTCTGTGTAAGGATTGCTCAAGGGCTT
GTACACCTTGGGAAGGGTTTGCTGACACTTTCTCCATACCATTCCGACCGGTTTCTTCTT
TCCCCGATGGCACTTGGAGGGATTGTCACTGTTCTGCACGCCTGCCTTGATATGAAATCC
ACCATTCTAGGGAAATATCACTACATTCTTTACATTATTGTGTTGGCGATGCAGCCAAGG
ATGCTTTTAACGGTGGATGAGGATCTGAAGCCTCTTCCTGTTCCAGTGCGGGTTGGGCAA
GCAGTTGATGTGGTTGGACAGGCAGGAAGACCTAAGACAATCACCGGCTTTCAGACGCAT
ACCACTCCTGTCTTGCTTGCAGCGGGGGAGCGAGCAGAATTGGCGACTGACAAGTACATT
CCCCTGACCTCCACGTTGGAGGGCTTTGTAATTCTGAAGAAGAACCCGGAATACCACGAG
GAGTGAGGGAAACCCCCTAGGCTTTGATCTGATGCAAGTTTTTGGAGTTCCCCAGCATGG
CATGCTCGGAGGTAAAGGTTGTCGTCACGGAGGATCCTTCACTATGCTCTTACACCTCGG
CATTTGCTGGTGGTTCATCCAAAAACATTTTTATTCCGTCCACCAGAGCTGTAACTAACT
GCAATCTTGTTTGGTTGCCCGAATGGACCGGCATGCCACTTGTACCCACTCTGGTGGACA
TGTAGGAGTTGAACTGGTGGTGTCTTTTGACCTTAAGCTTATTTGTATATGTATCAAGTG
TGTACTGAAAGTTACATCTTTAGAACTGATACGGCGTTGTCATTCACTAGCACAGTATGT
TTAGCCTTTTTTGTGGACCTGCGCTCGTTAATTTTTTGTGGAGTTTACGTCAGCAAAAAA
AAAAAAAATAAAAAAAAAAAAAATAATTTTGTTTTAGTTGCTGTTATTCTGTTTTACAAC
CTGAGGACGATACCGATCAAATATTCATTTAAGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g05340.1	899	0.0	protein\|proteasome/cyclosome repeat containing protein, expressed
Brachypodium v1_2	Bradi3g03720.1	899	0.0
Arabidopsis v10	AT2G20580.1	891	2e-171	\| Symbols: RPN1A, ATRPN1A \| 26S proteasome regulatory subunit S2 1A \| chr2:8859211-8864699 FORWARD LENGTH=891