barSeed - Barley Seed Development Database

Probe CUST_36877_PI390587928

Source Contig U35_1351

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36877_PI390587928	Hv_44K_v2	TTGGTGCTTCAGACTCTGGAAGTCTCTAGTTTTATTCAAATAGATTTAACTGTGGATTTC	2184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366066	2409	2e-24	2192 - 2251	100	60 / 60	plus	ABC03143 ABC03767
JLOC1	JLOC1_23960.1	913	8e-25	728 - 787	100	60 / 60	plus
Harvest21	ABC03767	2320	3e-25	2185 - 2244	100	60 / 60	plus	ABC03767
Harvest35	U35_1351	2321	3e-25	2185 - 2244	100	60 / 60	plus

Contig Sequence (2321 bp)

>U35_1351 2321 Hv_44K_v2
GGTAGTTGGGAGCGAAATCCTCTCCTCCCATTCCTACCAAACCCTAGAAAACCCAAAAAA
ATCCGCAAAATTACCCCAAAAATCTCGAAAAAATTCATCAGGAACCTATCCTTCGGTCGG
ATCCGCTTATCTATTACCTTTCCTACCCGGTTGATGATGGCGGCGCAGGTTCAGGCGTTG
GCAGCGCCAGCGGCTGGCGCGATGGAGGGCGTCGCGTCTCCGGCGGCTGTTGCTGCGGCA
GCAGCTGCAACTGCAACCACTACGGCTTTTCCAGCGACGTCCCTGTACGTGGGGGATCTG
GACGTGAGCGTGCAAGACGCGCAGCTCTTTGACGTCTTCAGCCAGGTCGGCTCGGTGGTG
TCTGTGCGCGTGTGCCGGGACGTCAACACCAGGATGTCCCTAGGCTACGCGTACGTCAAC
TTCAGCAGCCCTGCCGATGCTGCAAGGGCATTGGAAATGCTAAACTTCACTCCTGTTAAT
GGGAAGCCTATCAGGATAATGTATTCTAACCGTGACCCCAGCTCACGTAAAAGTGGTGCT
GCAAATATATTTATCAAGAATCTTGACAAGTCAATAGATAACAAAGCGCTATATGACACA
TTTTCTGCCTTTGGAAACATTCTTTCATGCAAAGTTGCTACAGAAATGTCTGGAGAATCC
AAGGGTTATGGTTTTGTTCAGTATGAGCAGGACGAATCAGCACAAAATGCTATTAATGAG
CTCAATGGGATGCTTTTGAATGACAAAAAGGTTTATGTTGGGCCTTTTGTTCGTAAACAG
GAAAGGGAAAATGTTTTTGGCAGTCCCAAGTTCAATAATGTGTATGTAAAGAATCTATCA
GAATCTACCACTGAAGATAATCTGAAAGAATTGTTTGGTAATTTTGGACCTATAACTAGT
GTTATTGTAGTGCGAGCAGATGATGGTAAATCCAGATGCTTTGGATTTGTGAACTTTGAA
AATCCGGATGATGCTGTACATGCTGTTGAGGATTTGAATGGCAAGAAATTTGATGATAAG
GAATTATATGTTGGTAGAGCTCAGAAGAAGTCTGAAAGGGAGATGCAGCTGAAAGAAAGT
TTCGAGAAAAGCAATAAAGAGACAGCCGACAGGAATCAAGGCACTAACTTGTATTTGAAA
AACTTGGATGGTAGTGTTGATGACGATGAGAAGTTAAAAGAACTTTTTGCCGAATTTGGC
ACTATAACTTCTTGCAAGGTTATGCGGGATTCAAATGGGGTCAACAAAGGATCTGGTTTT
GTTGCATTTAAATCTTCTGAAGATGCTACACGGGCTCTTGTGGCAATGAATGGTAAAATG
GTTGGCAGTAAGCCTCTTTACGTAGCACTTGCACAACGAAAGGAAGAAAGAAGAGCCAGG
CTGCAGGCGCAGTTTTCGCAAATGCGTCCTGTGATGCCACCTCCAGTTGCTCCACGCATG
CCCATGTACCCCCCTGGTGTTCCTGGTATGGGCCAACAGCTATTCTATGGCCAACCACCT
CCAGCTTTTGTTAACCCACAGCCTGGATATGGTTTCCAGCAACATATGATTCCTGGAATG
AGACCTGGTGTTGCTCCGATGCCAAATTTTGTCATGCCAATGGTCCAGCAAGGTCAACAA
CCACAACGCCCATCTGGGAGGCGTGCAGGTGCTGGTGGAATGCAGCAGCCAATGCCAATG
GGTCACCAGCAGATGGTTCCAAGGGGCGGTCGTGGTGGTTACCGTTATGCGTCGGGCCGT
GGCATGCCTGAGGCTGCATTCCGTGGTGTTGGAGGTATGGCGCCATCTCTGTATGAGATG
GGAAGGATGACTCCTGGTGACACTGGAGCACCGCAGCAAGTTTCTAGTGGAGCATTGGCA
TCTGCACTTGCCAACTCTCCGCCGGAGCAGCAACGACTGATGCTTGGTGAAAGCTTGTAT
CCACTTGTTGATCAGCTGGAGCATGATCAGGCTGCCAAGGTTACCGGTATGCTTTTGGAG
ATGGACCAAACTGAGGTTCTTCATCTAATCGAGTCACCTGATGCTTTGAAGTCTAAGGTC
GCTGAAGCTATGGAGGTTCTCCGCAGCGCTCAGCAGCAGCAGACCAATGTTCCAGCTGAT
CAGCTGGCTGCTCTTTCGTTGAGCGATGGCTTTGTTGCTTCTTAGTTGGAACTTTTCTTG
CTTGTTCCTGGTTACTGTATGTGCTTGGTGCTTCAGACTCTGGAAGTCTCTAGTTTTATT
CAAATAGATTTAACTGTGGATTTCAACATATTGTACTCTTATATTTGTTTAAATATTGAG
ATTAAAAAATGATACATTCATGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g22354.1	661	protein\|polyadenylate-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g20460.1	664
Arabidopsis v10	AT1G49760.1	671	\| Symbols: PAB8, PABP8 \| poly(A) binding protein 8 \| chr1:18416740-18419753 FORWARD LENGTH=671