barSeed - Barley Seed Development Database

Probe CUST_36874_PI390587928

Source Contig U35_1354

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36874_PI390587928	Hv_44K_v2	GCAAACCAGTGCTTGTTATTATGCATATATATATACATGCCATGTGACATGTTTGTGAAC	1263	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372454	1383	2e-24	1247 - 1306	100	60 / 60	plus	ABC01249 ABC04185
MLOC	MLOC_38039.1	774	2e-24	712 - 771	100	60 / 60	plus	ABC01249 ABC04185
JLOC1	JLOC1_24695.1	982	8e-25	712 - 771	100	60 / 60	plus
Harvest21	ABC04185	1448	3e-25	1264 - 1323	100	60 / 60	plus	ABC04185
Harvest35	U35_1355	1459	3e-25	1276 - 1335	100	60 / 60	plus
Harvest35	U35_1354	1421	3e-25	1264 - 1323	100	60 / 60	plus

Contig Sequence (1421 bp)

>U35_1354 1421 Hv_44K_v2
AGTCCCGACCACCACCACCGACAGGCCAATCAATCATGGAGTTCCCTCACCGCCACGGCC
ACGGCCACGGCCGCCGCGACGACGACGACGACGACCGCCGCCCCCCCGCCCCCTACGGCC
GCCAAGAGCCCGACCCCTACGGCGCCCCTCCCCCGTCCTACGGCCGCCGCCCCGACGACG
TCGCCTACGGCGCCCCGCCCCCCGCCTACGGTGGCGGCCGCGAGGACGACTACGGCGGCC
GCGCCCCGGCCTACGGTGGGGGGCGCGAGGACGACTACGGCGGCCGCGCCCCGGCCTACG
GTGGGGGGCGCGAGGACGACTACGGCGGCCGCGCCCCGGCCTACGGTGGGGGGCGCGAGG
ACGACTACGGGCGCCACGCGCCCGCGCCGGCCGGGTACGGCGGGGGTGACTACGGGCGCC
ACGCCCCCGCTCCGGCGTACGGAGGCGGCCGCGACGAAGGCTACGGCGCGCCCGCCCACG
GCAACGTGGTGCACGTCTCCCACGAGTCCGGCGACGAGAGGCCGCAGTACGGGGGCTACG
GCAACGAGACGCGCCCGCACCACGGCGGCGGCGGCGGGATGGCGCCCCCGGCGACCAGGC
AGCCGACGTACAGGGTCTTCTGCAAGGCCGGGGAGGAGAGCTTCAGCCTCGCCGCCAGGG
ACGGCAAGGTCTGCCTCGTCCGCACCGATCGCGACGACGACACGCAGCACTGGATCAAGG
ACATGAAGTACAGCACAAGGGTCAAGGATGAGGAAGGCTACCCTGCCATGGCGCTCGTCA
ACAAGGCCAGCGGAGAGGCTCTCAAGCACTCCCTCGGCCAGTCCCACCCTGTTCTTCTGA
CCAGGTACAATCCAGACACCCTGGACGAGTCGGTCCTTTGGACCGAGAGCAGGGATGTTG
GGGCAGGCTACCGCTGCATCAGGATGGTGAACAACATCTACTTGAACTTTGATGCGCTCC
ATGGCGACAAGGACCATGGCGGTGTGCGCGATGGAACCACCCTCATTCTGTGGGAGTGGA
CTGAGGGCGACAACCAGCGCTGGAAGATCGTTGCCTGGTGAACGATGCATATGCTGAAGT
TTGTTGGTTCAAACAGCGCGCGGTCTTAATAATAAGCAAGTACTGAATGTTTCTGGAATA
AAAAGGATGGCGTCGATGTGAGCGGTGTTTCTGTTTTGTTTGAGGAGTTATATATACATA
TATATGTTGATGAACTTGTAATGGTGGTTTTATTGGCCTAGATTATGTGTGATGGATGCA
TGAGCAAACCAGTGCTTGTTATTATGCATATATATATACATGCCATGTGACATGTTTGTG
AACTATAATAGAATTGGTTTATCATCAAAAAAAAAAAAAAAAATGTACGGAGATCTATCT
ATATNACTTAGTTTTTGGTGGATANNNAAAAAAAAAAAAAA

Homology of Contig U35_1354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01450.2	269	2e-104	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi2g03460.3	348	1e-118
Arabidopsis v10	AT2G39050.1	317	5e-63	hydroxyproline-rich glycoprotein family protein \| chr2:16303427-16305336 FORWARD LENGTH=317