barSeed - Barley Seed Development Database

Probe CUST_36869_PI390587928

Source Contig U35_1359

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36869_PI390587928	Hv_44K_v2	CTGTTATATCATGTTGTGCCTTGGATTTGGAAGAGGAGACAAAAGAAGAAAATGAAATTG	1466	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.748	0.912	1.147	1.443	0.840	0.925
Raw	9004.607	16950.103	18738.933	35798.100	7701.683	9097.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68318.1	1674	2e-24	21 - 80	100	60 / 60	minus	ABC04009 ABC04010
JLOC1	JLOC1_45193.2	1733	8e-25	1598 - 1657	100	60 / 60	plus
JLOC1	JLOC1_45193.1	1901	8e-25	1766 - 1825	100	60 / 60	plus
Harvest21	ABC04009	1535	3e-25	1450 - 1509	100	60 / 60	plus	ABC04009
Harvest35	U35_48820	557	3e-25	44 - 103	100	60 / 60	minus
Harvest35	U35_1359	1552	3e-25	1467 - 1526	100	60 / 60	plus

Contig Sequence (1552 bp)

>U35_1359 1552 Hv_44K_v2
CTCGCAGCCGCAATCCGCCCCTCGTGCCCTCCTCCTCAGATCTCCAGCCCCCGTCCCGCG
CCCTCGCCCTCGCCCTCGCCGCATTCCCATTTCCTCGAGTCGACTACGATGGGTGCATCT
GCAGCTACCGGTATGCAGATGGTGGCGGCACGCCCTTGCATCCCAGCTTGCCAGCGAATG
CTTGGGTCGAAATCTGTGGTTTCTGCATTCGGAAGGGCACTCAGCACCAGAACTGGCTTT
GCAAGCTGTGTTAAGACTGCGTCAGCAGGACCGCTCATTTCTGTAAGCCACAAGAGGTTT
GCCGTCAGGGCGATGTCTCAGGGAGCTGTCCAGGGCCTCCCCATTGATCTCAGAGGTAAA
AGAGCATTTATTGCTGGAGTTGCTGATGATAATGGTTATGGCTGGGCAATAGCAAAGGCT
CTTGCTGCAGCTGGTGCTGAAATTCTTGTTGGTACATGGGTGCCTGCACTGAACATATTC
GAGACAAGCTTGAGACGTGGAAAGTTTGACGAATCACGGAAGCTGCCTGATGGATCCCTT
ATGGAGATTACTAAAGTCTACCCACTGGATGCAGTTTTTGACTCCCTGGAGGATGTTCCT
GAAGATGTCAAAGCAAATAAGAGGTACGCGGGGTCCTCAAAATGGACTGTGAAGGAAGTT
GCTGAAACTGTGAAGGATGATTTTGGCAGCATTGATATCCTTGTGCATTCTCTTGCCAAT
GGTCCTGAGGTAACAAAGCCCTTGCTGGAGACATCAAGAAGTGGGTATCTTGCTGCAGTT
TCAGCATCTAGTTACTCATTCATCTCTTTACTTCAGCACTTCCTTCCCATCATGAATCCA
GGAGGTGCTAGTATCTCTTTGACATACATTGCTTCGGAAAGGACAATCCCTGGCTATGGT
GGTGGCATGAGTTCAGCAAAGGCAGCACTTGAGAGTGATACAAGAGTTCTTGCTTTTGAA
GCAGGCCGAAAGGGCAAAATCAGAGTGAACACTATATCAGCAGGTCCCCTGGGGAGCAGA
GCTGCAAAAGCTATTGGATTCATCGAGAAGATGATCGAGTACTCTTATGTTAACGCACCA
TTGCAGAAGGAACTCTTGGCAGAGGAAGTGGGGAACGCAGCAGCATTCTTGGTGTCTCCA
TTGGCATCTGCAATCACTGGTTCAACTGTTTATGTCGACAATGGACTCAACACGATGGCG
CTTGCGGTTGACAGCCCTACTTTGTCTACATAAACATTTTCTTGATTTCTGAATGGGGTG
TAGTGAGTTCGAACTGGAGTGGTCTGTCACTGGCCCTATCCAAAACTAGGCTGTTCGTGT
AGTTCAACATGAATTTGTGAGAGCGATGGTAGTAGCTTGAGGATAGAAAGTTGCTGAAGC
ATGGATGATTGTGTGCCGTGCTTTCGGTACTCCGGACTACAAAGTTGTCATGAAGAAATA
GAAGTGTGATAGTGCAGTACATTGGTCTGTTATATCATGTTGTGCCTTGGATTTGGAAGA
GGAGACAAAAGAAGAAAATGAAATTGAATAAAAGAATTGCATTTTGGTGATT

Homology of Contig U35_1359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g10600.1	372	0.0	protein\|enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed
Brachypodium v1_2	Bradi1g37040.1	375	0.0
Arabidopsis v10	AT2G05990.1	390	1e-174	\| Symbols: MOD1, ENR1 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr2:2322876-2324867 FORWARD LENGTH=390