barSeed - Barley Seed Development Database

Probe CUST_36868_PI390587928

Source Contig U35_1360

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36868_PI390587928	Hv_44K_v2	GGCCGATTGGCGCCTCAACAAACTGTGTTATATATACATCAGAAATCGTGTTTACCCTTC	1470	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73157.2	1641	2e-24	1582 - 1641	100	60 / 60	plus	ABC04009 ABC04010 ABC44389
JLOC1	JLOC1_48688.1	1714	8e-25	1602 - 1661	100	60 / 60	plus
Harvest21	ABC04010	1563	3e-25	1455 - 1514	100	60 / 60	plus	ABC04010
Harvest21	ABC44389	395	5e-23	17 - 75	98	59 / 60	minus	ABC44389
Harvest35	U35_1360	1579	3e-25	1471 - 1530	100	60 / 60	plus

Contig Sequence (1579 bp)

>U35_1360 1579 Hv_44K_v2
TCCAGAATCGCCGCCACCTTGCTGCGCTCATCAACAGCACGCGCATCCCCTGTGCTCCCC
CACCCAGATCCCTCCCTCACGCATTCCGTCTTCTCCCGAGGCTGGTGGTAGCTGCTAGCA
CGGACGATGGCCCCTTGTGCAACTGCCGGCGCGCAGATGCTGGCCGCACGCCCCTGCGTC
TCGGCCTCTCAGAGTATGCTCACCTCGAGGGCGGCCGTCTTGCGGATCAACCTGGCGCTC
GGCGCTGGTAGCTTCGCGAGCTGTCCCAGGATCTCCTGCTCTAGGTCTCTTGGTTCTTGT
GTCGCCGTAAGAGCGGTGTCAGGAGAAGGTAGCTCTTCTGGGCTGCCCATCGATCTTAGA
GGGAAAAGAGCATTTATTGCTGGGGTTGCTGATGATAACGGCTATGGCTGGGCAATTGCA
AAGGCTCTTGCCGCAGCTGGGGCTGAAATTCTTGTTGGTACATGGGTGCCTGCACTTAAC
ATATTCGAGACAAGCCTGAGGCGTGGAAAGTTTGACGAATCACGGAAGCTGCCTGATGGA
TCTCTTATGGAGATTGTTAAAGTCTATCCACTGGATGCTGTCTATGATTCCCCGGAGGAT
GTTCCTGAAGATGTCAAAACAAACAAAAGGTATGCAGGATCGTCAAATTGGACTGTGAAG
GAAGCTGCCGAATTAGTTAAGAAGGAATATGGCAGCATTGACATTCTTGTGCATTCTCTT
GCTAATGGTCCTGAGGTTACAAAACCTTTGCTGGAAACCTCAAGAAGTGGTTATCTTGCT
GCAATTTCAGCATCCAGTTATTCCTTTGTTTCTTTACTTAAGCATTTCCTTCCTATTATG
AATCCAGGTGGTGCTAGTATCTCGCTAACATATATTGCATCTGAAAGGACAATTCCTGGA
TATGGCGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGATACAAAAGTACTTGCT
TTTGAAGCTGGACGCAAAGGCAAAATCCGAGTGAACACCATATCTGCAGGTCCTCTGGGA
AGCAGAGCCGCCAAGGCAATTGGATTCATTGAGAAGATGATCGAGTACTCTTATGTCAAC
GCACCATTGCAGAAGGAGCTTCTGGCAGATGAAGTCGGGAATACGGCAGCATTTCTGGTG
TCTCCTTTGGCTTCTGCCATCACTGGCTCGACTGTTTACGTCGACAATGGACTTAACACC
ATGGGTCTTGCAGTTGACAGCCCCACGGTATCTTCGTTGTTGTGATTCTGGTAGGTGGAC
CTATTTTCCTGATTCACCGCGGCTTGATTGTGTTGAATAAAGAGCTTAGTTAGTTAGTAC
TGTAAGAGGCTCTTACTAGAGCTGAGGGCAGGAGAAAAAAGAGGGGATGGCTGTTGAAAT
TGACCTTTTAAGCAGCCCAGCACCACCTCTTTGGCCCATTTGTAATGTTGCTATCTCGAA
TGTTGTTGTTGCTGATACTGTGTTCAGTGTGGCCGATTGGCGCCTCAACAAACTGTGTTA
TATATACATCAGAAATCGTGTTTACCCTTCAAAAAAAAAAAAAAAAAATCGTGTTCAGGA
AAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23810.1	376	0.0	protein\|enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed
Brachypodium v1_2	Bradi1g37040.1	375	0.0
Arabidopsis v10	AT2G05990.1	390	8e-178	\| Symbols: MOD1, ENR1 \| NAD(P)-binding Rossmann-fold superfamily protein \| chr2:2322876-2324867 FORWARD LENGTH=390