barSeed - Barley Seed Development Database

Probe CUST_36854_PI390587928

Source Contig U35_13513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36854_PI390587928	Hv_44K_v2	ATATGTATGTCGGGCAGAAGAAAAAGGGAACGTTTCAGCATTCTAGCTTTCTCGCTGGAG	98	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.196	0.957	1.628	1.362	0.714	0.979
Raw	3.746	43.394	59.638	76.086	15.328	22.778

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374038	3529	2e-24	1088 - 1147	100	60 / 60	plus	ABC08422 ABC35436
MLOC	MLOC_37553.1	2026	7e-23	899 - 958	98	59 / 60	minus	ABC35436
MLOC	MLOC_37553.4	1300	7e-23	177 - 236	98	59 / 60	minus	None
MLOC	MLOC_37553.3	2108	7e-23	836 - 895	98	59 / 60	minus	ABC35436
JLOC1	JLOC1_24320.1	2132	4e-23	1072 - 1131	98	59 / 60	plus
Harvest21	ABC26582	511	3e-25	99 - 158	100	60 / 60	plus
Harvest35	U35_13513	511	3e-25	99 - 158	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_13513 511 Hv_44K_v2
GGATGGCAAGTTCATGTACAAGAACAGCAGGCAAATCCTCGACACCTCCGGCGGTCCGAG
GGACGCAAAATGGATCTTTGTGCTGAGCACATCCAGGAATATGTATGTCGGGCAGAAGAA
AAAGGGAACGTTTCAGCATTCTAGCTTTCTCGCTGGAGGCGCCACATCTGCTGCCGGGCG
ACTGGTTGTCGAAGATGGAGTTCTGAAGGCTATCTGGCCTCACAGCGGGCACTACCGCCC
CACCGAAGAGAACTTCCAGGAATTCCAGGCCTTCCTCAGAGAGAACAAGGTCGATCTCAG
CGATGTTAAGATGAGCCCAGCTGAAGAGGATGAGGAGTTCTGGAGCAGGCTCAGAAGCAT
CCCTACTGAGCGGTGCACCGATGGCGACAAACCCGAAGATGAAATGGTTCCTGCTGAAGA
AACCATCCCTTGCCTGGCTGAGGTCACTGAAACCACACCTGAAGAGGTCTTCCAACTCCA
AGAAACAGGCAACGATCGTAGCCAACCGGAG

Homology of Contig U35_13513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43970.1	586	2e-83	protein\|calmodulin-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g20350.1	576	9e-87
Arabidopsis v10	AT3G58480.1	575	1e-52	calmodulin-binding family protein \| chr3:21629341-21631853 FORWARD LENGTH=575