barSeed - Barley Seed Development Database

Probe CUST_36839_PI390587928

Source Contig U35_25503

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36839_PI390587928	Hv_44K_v2	TGCAGTAAAAGCTGCATTGTCCGTGTACTTGGAAAATCTCGCTACTACTCTTGGCTCTAG	1025	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359778	2067	7e-23	1423 - 1482	98	59 / 60	plus	ABC03654
MLOC	MLOC_69042.4	1199	7e-23	415 - 474	98	59 / 60	minus	ABC03654
MLOC	MLOC_69042.3	1437	7e-23	651 - 710	98	59 / 60	minus	ABC03654
MLOC	MLOC_69042.1	1425	7e-23	574 - 633	98	59 / 60	minus	ABC03654
MLOC	MLOC_69042.2	1424	7e-23	573 - 632	98	59 / 60	minus	ABC03654
JLOC1	JLOC1_45734.1	1380	4e-23	754 - 813	98	59 / 60	plus
Harvest21	ABC22802	1087	3e-25	1026 - 1085	100	60 / 60	plus
Harvest35	U35_25503	1087	3e-25	1026 - 1085	100	60 / 60	plus

Contig Sequence (1087 bp)

>U35_25503 1087 Hv_44K_v2
CCGGGAGGTTGGTGATGGAACAACATCTGTTGTCATCATAGCTGCAGAGTTGCTCAAGAG
CGCCAATGAACTTGTGAGGAATAAAATCCATCCGACCTCAATTATTAGTGGCTACAGGCT
CGCTATGCGTGAGGCTTGCAAGTATGTCGAAGAAAAGCTCTCTGTCAAGGTTGATAAACT
TGGAAAAGATTCCCTTGTTAACTGTGCAAAAACTAGCATGTCTTCGAAATTGTTAACTGT
GCAAAAACTAGCATGTCTTCGAAATTGATTCACAGCGACAGAGATTTCTTTGCAAATCTG
GTTGTCGAAGCAGTTCAAGCTGTGAAGACTACAAATGCTAAGGGAGCAGTGAAGTATCCA
ATCAAGAGCATTAATATTTTGAAAGCTCATGGTAAAAGCGCTAAGGAAAGTTACATGCTC
AATGGTTATGCGCTGAACACAGGCCGTGCAGCTCAAGGAATGCCTACAAAAGTAACGGCT
GCTAAAATCGCTTGTTTTGATTTTAACCTCCAGAAGACAAAAATGCAAATGGGCGTTCAA
GTTCTTGTATCTGATCCAAGAGAACTTGAGAAGATCCGTCAGAGAGAATCTGACATAACA
AAGGAGCGAATTGAGAAAATTCTCAAGGCCGGTGCTAATGTTGTATTGACCACCAAGGGA
ATTGATGATATGTCATTGAAGTACTTTGTTGAGGCTGGAGCAATTGCGGTGAGGCGTGTG
CGTAAGGAGGATTTGCGTCATGTTGCCAAGGCAACTGGTGCAACAATGGTGAGTACTTTT
GCTGACATGGAAGGTGAAGAAACATTCGATCCATCATTCCTTGGACATGCTGATGAAGTT
GTGGAAGAAAGAATTGCCGACGATGATGTGATTCTGGTGAAAGGCACAAAGAACACTAGT
GTGGTCTCAGTTATACTTAGAGGAGCGAATGACTACATGCTAGATGAGATTGAGCGGTCT
TTGCACGATGCACTCTGCATTGTGAAGAGAACACTGGAATCCAATATGGTAGTTGCTGGT
GGTGGTGCAGTAAAAGCTGCATTGTCCGTGTACTTGGAAAATCTCGCTACTACTCTTGGC
TCTAGGG

Homology of Contig U35_25503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46620.1	546	2e-172	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi5g17750.1	546	4e-172
Arabidopsis v10	AT3G20050.1	545	3e-157	\| Symbols: ATTCP-1, TCP-1 \| T-complex protein 1 alpha subunit \| chr3:6998544-7002266 REVERSE LENGTH=545