barSeed - Barley Seed Development Database

Probe CUST_36826_PI390587928

Source Contig U35_13537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36826_PI390587928	Hv_44K_v2	CTGATCTCAATGACGTTATCGTGTGCTTTCATTGCTGTGCAGCTGTTCCATGTCAAGAAG	366	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52485.2	2907	2e-24	1647 - 1706	100	60 / 60	plus	ABC25397
MLOC	MLOC_52485.4	2305	2e-24	1618 - 1677	100	60 / 60	plus	ABC25397
MLOC	MLOC_52485.1	2677	2e-24	1649 - 1708	100	60 / 60	plus	ABC25397
MLOC	MLOC_52485.3	3587	2e-24	1647 - 1706	100	60 / 60	plus	ABC25397
JLOC1	JLOC1_33637.3	2950	8e-25	1682 - 1741	100	60 / 60	plus
JLOC1	JLOC1_33637.2	2790	8e-25	1685 - 1744	100	60 / 60	plus
JLOC1	JLOC1_33637.1	3113	8e-25	1685 - 1744	100	60 / 60	plus
Harvest21	ABC22014	549	3e-25	367 - 426	100	60 / 60	plus
Harvest35	U35_13537	550	3e-25	367 - 426	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_13537 550 Hv_44K_v2
GTGCTGGAGAAGGAGAGGCTACTTAAGGTCAGCTATAATATCCGCTATGTTGGGAATTGG
TCACTAGAAACATTTCAGCGTCAGCATATTTCGGCGGAAGGTGTCTATGACACCGAGACA
GGCTCCTTGTGCCTGATCGCGTGTCGGGGGGCTAATGTCTCCTCCTCAGACTGTAAGATT
CTGATAACTGCTCGCTTTGCTAGTTTGGACTCGAAAGCAACACAGCATGTTCAGGGGGAA
ATTAGAAGCTTGAGGGACAAGGCTGATCCTCTTTTCTTTGAAACACTGGAAATTTCTTCA
TATGGGATGTACATAGGCCAAGTGGAAGACTCAATATGGAGAATGGACTTGGAAAGCACC
ATGGCCCTGATCTCAATGACGTTATCGTGTGCTTTCATTGCTGTGCAGCTGTTCCATGTC
AAGAAGGTCCCTGAAGCGCTTCCTGCCATGTCGATCACTATGCTTGTCGTGCTCGCTCTG
GGTTACATGACTCCTCTCGTGCTCAACTTTGAGGCTCTTTTCAAGCACAGCAACAAACAG
CCTGTTCTGT

Homology of Contig U35_13537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48370.1	530	1e-90	protein\|expressed protein
Brachypodium v1_2	Bradi2g16940.1	908	5e-92
Arabidopsis v10	None