barSeed - Barley Seed Development Database

Probe CUST_36819_PI390587928

Source Contig U35_25516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36819_PI390587928	Hv_44K_v2	CTGTTCCTGCATACCGTTCACCAACAGTCAGTTTACATTGAAATGCACTCGACATTGTCG	588	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.362	1.250	1.187	0.918	0.377	0.404
Raw	15975.900	22624.190	19216.467	23133.633	3370.020	3928.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375269	1842	7e-23	1778 - 1837	98	59 / 60	plus	None
JLOC1	JLOC1_42632.1	1892	4e-23	1775 - 1834	98	59 / 60	plus
Harvest21	ABC49466	645	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_25516	648	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_25516 648 Hv_44K_v2
CGCCCATCGCACCGTGATGAGTTCATCCGCTGTAAAAGGTGTGACAAGGAGAGGAGGTTT
CGGCTTCGGACCAAAGAAGAGTGCCGTGTTTACCATGATGCTCTTGCGAAACCTAACTGG
ACATGTGCAGATTTGACAGCTGATAGCGTCACCTGCGAGGACGACGAGGAGCGAGGTAGC
CGCAAGGTGCTCAAGGGCTGCTCGCGCGCGGCGTCGTGCACGGGGTGCATGAAGTGCGTG
TGCTTCGGGTGCGAGATGTGCCGCTTCACCGACTGCGAGTGCCAGACCTGCGTCGACTTC
TACCGCAACTCCAAGGAGTAGGGTGATGATCGCAGCAGCAGCAGCAGCAGCAGGCATTCG
TTCCATTGCATTCGTTAAGAACACCTAAAAAGCCCCCCTCTTGCCCAGGCTGTCGTCCAT
GGCGGTCCGGAGGTGGTCAGGCTTCCGTAGCTATCACCTCCCCGGCACATCACCAGGGAG
GAGTTCCGGTACCGAAAACATTGTTCTGTTCTTTCGTTGGTCCGTGGCTTTGCTTTGCTT
CCGTTTCCATAAGACCCACCCACCTGGGGGAGGCGAAGTCAGTAGCACCTGTTCCTGCAT
ACCGTTCACCAACAGTCAGTTTACATTGAAATGCACTCGACATTGTCG

Homology of Contig U35_25516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57240.1	236	5e-64	protein\|expressed protein
Brachypodium v1_2	Bradi2g51790.1	231	2e-58
Arabidopsis v10	None