barSeed - Barley Seed Development Database

Probe CUST_36812_PI390587928

Source Contig U35_13545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36812_PI390587928	Hv_44K_v2	AATTCTGTTCTTTGGGGCTCCATCTATGCCCCTCAACCAGTGTAAAGTTTTGGTTCTCCT	340	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.756	2.958	3.720	1.310	0.391	0.241
Raw	155.807	948.072	1023.330	552.872	59.074	40.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376599	2096	2e-24	1839 - 1898	100	60 / 60	plus	ABC24717
MLOC	MLOC_12305.1	1099	2e-24	844 - 903	100	60 / 60	plus	ABC24717
JLOC1	JLOC1_8256.1	978	8e-25	718 - 777	100	60 / 60	plus
Harvest21	ABC24717	521	3e-25	341 - 400	100	60 / 60	plus	ABC24717
Harvest35	U35_13545	521	3e-25	341 - 400	100	60 / 60	plus

Contig Sequence (521 bp)

>U35_13545 521 Hv_44K_v2
CACCGGAGTCAGGCGGGATCGCAAATACGCCATTCGAGCAAGGAACGCGTACTCCACCGG
TGTGCACATGTCGCAGAATGTCTACGGGAGGACGACCCACAAAACCGAAAACTTGATCAG
ATACTACCACTATCATAACTCGATCAATGTCATGGAGGAGCCTTGCCGGGAGTTTGTGCC
GAAGCCCAGCAATGGCAGCAAGGTAATGTTCGAGGAGGTACCGTACGTCTACGACGATAA
CATGAAGCGTTTGGCAGGCGATATCAAGCGCTTCGAGGCGGAGACTATTGGCGCCGTCCA
TTCGTAGCATCTGGAGGGTAACCTAGTCTGGTACATAGACAATTCTGTTCTTTGGGGCTC
CATCTATGCCCCTCAACCAGTGTAAAGTTTTGGTTCTCCTCGGCATTCTCGGCTCTGGCA
TCAGTTTGACGCATTNTTCTTTCTTTCATTTTAGCTGTTCTTTTAAGCTCACCTTTGATA
CCTGCTTATAGATTTGTNGTGGTACAAAAAAAAAAAAAAAA

Homology of Contig U35_13545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22330.1	522	2e-57	protein\|expressed protein
Brachypodium v1_2	Bradi1g42556.1	503	1e-52
Arabidopsis v10	None