barSeed - Barley Seed Development Database

Probe CUST_36802_PI390587928

Source Contig U35_25526

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36802_PI390587928	Hv_44K_v2	TTGTCTATAGTTCAGGCTCTTATGGAGTGGTAATTTCTTATAGAGGACCTAAAAAACACA	1086	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.684	2.411	1.437	0.704	0.341	0.557
Raw	39.840	84.966	43.869	33.773	4.470	10.396

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC25355	1146	3e-25	1 - 60	100	60 / 60	minus	ABC25355
Harvest35	U35_25526	1146	3e-25	1087 - 1146	100	60 / 60	plus

Contig Sequence (1146 bp)

>U35_25526 1146 Hv_44K_v2
GTCGCCGAGAAATCGCTGACAGTTTCTAGTGCTCGCGCCAGCAAATCCGTAGCAAGAATC
ACCGCAGCCCATAGATCACCCCCCACCTCCCAGCCCCCTCGCCGGGAAACTGGATCTTGT
TCCACAGGTGATCTGATTCGACTCTGTTCTTCGCCCGTGATGGCAGCAATGAACATTGAT
CTGGGAGGATTGGCAGGCAGGCCTACTACTTCACAGGCGGATCCTTTTCAAAGTGCTTTG
TATGGAGCTGGACCTGGACTCATCCGAAGTGGACTAGGAGCGTACAGTGAGAAGTTTCTA
GGTTCAAGCTCTGACTTTATGCAAAGCAATATCACCCAATATTTGTCCAATCCACAATAT
TACTTTCAAGTGAACAATCAGTATGTGAGGAACAAGCTGAAGGTTGTCTTGTTTCCTTTT
CTGCATCGGGGACACTGGACTAGGATAACTGAGCCGGTGGGAGGAAGGCTGTCATACAAA
CCTCCAGTTCAAGACATCAATGCTCCAGATCTGTACATCCCTCTGATGGCTTTTGCCACC
TACATTGTAGTTGCTGGATATGCCTTGGGTGTTCTTGGAAGGTTTACCCCGGAGGCACTG
ACTATACAGTTCACAAAAGGGTTACTCGGTTGGTTTATGCAAGTCATCCTCATTAAAGCT
CTACTTTACTCACTGGGAAGTGGTGAATCGCCGTTGCTTGACATTGTGGCATATGCTGGG
TATGGGTTTGCCGGTACCTCACTTGCGATGCTGGTCCGCATCTTCTGGAGCTACTCATAC
TATTTTGTGCTGCCGTGGTTCTGTATCTGCACTGGAGTGTTCCTGGTTAAGACGATGAAG
AGGGTTTTGCAGGGTGCATCGAGGACTTATGAGAGACATCCTAGCAGGAACCACTACTTT
CTTCTATTCCTCGCGGCTGCGCAATTCCCCATGCTTTTCTGGCTAGGCAACATCAAGGGC
TGATGTTTCAGTCTTATCTCAGAACAGGGATAATTTTTTTCCTTTTCTTTTCTTCAAGGT
GGAGGCCAAAACTCGATCAGAATAAAGTTTGAGGTTTTGTCTTACTGATGAACTTCTGTA
GTAGCCTTGTCTATAGTTCAGGCTCTTATGGAGTGGTAATTTCTTATAGAGGACCTAAAA
AACACA

Homology of Contig U35_25526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41590.1	268	7e-179	protein\|YIF1B, putative, expressed
Brachypodium v1_2	Bradi1g35840.1	268	0.0
Arabidopsis v10	AT3G59500.1	269	1e-126	Integral membrane HRF1 family protein \| chr3:21987110-21988169 FORWARD LENGTH=269