barSeed - Barley Seed Development Database

Probe CUST_3678_PI390587928

Source Contig U35_5272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3678_PI390587928	Hv_44K_v2	ATGGATATGGCGTGCGTATATTAGGATCAGTGTATGTGCGCGTATATAACATAGCGTCCG	1030	GeneList: turquoise MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.115	1.274	1.314	1.056	0.393	0.444
Raw	70.142	131.605	113.375	143.439	18.453	23.388

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11628	1093	3e-25	1031 - 1090	100	60 / 60	plus	ABC11628
Harvest35	U35_5272	1093	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1093 bp)

>U35_5272 1093 Hv_44K_v2
ATGTATCCACCAGGNAACAGTATATGCTCACCCGACTACTCCTGGTGTGCATCCATTTCA
TTATCCTATGCAAACAAATGGAAATCTTGAACCTGCTGGAGCTCAGGGAGCTGCACCAGG
TGCTGCAGAAACAAATGGGAAAAATGAGCCTGGCAAAACATCTGGTCCATCTGCCAATGG
GGTTACGTCCAACAGTGAAAGCGGAAGTGATAGTGAGAGTGAAGGAAGTGATGCCAATTC
TCAAAATGATTCACATTCAAAGGAGAATGATGTAAATGAAAATGTACAATCAGGTGCAGT
GATAGGAGGAGTTGCTGGTCCTGCGACAAACTTGAACATAGGGATGGACTACTGGGGTGC
AACTGGCTCTTCACCTGTTCCTGCAATACGCGGCAAAGTACCGTCTGGTTCAGCTCGAGG
AGAGCAATGGGATGAAAGGGAACTGAAGAAGCAGAAGAGGAAGCTGTCCAACCGGGAATC
CGCGCGCAGGTCCCGGCTGCGCAAGCAGGCCGAGTGCGAAGAGCTTGGGCAGCGTGCCGA
GGCTCTGAAGTCAGAGAACTCGTCTCTGAGGATCGAGCTCGACCGGATCAAAAAGGAGTA
CGAGGAGCTCCTTTCGAAGAACACCTCTCTCAAGGCGAAGCTAGGGGAGACGGGCGGCGG
CGGCGACTCGGTGCCCGACATGAACGAACGGGGCGACACCAACGGCGGCAGCCACCACCA
GCAGCAGCAGGAGCCCTGACTGACCACCGGCGATAGCATGCGGCCTCTGCTCTACTTACA
TAGCTCGTGATGATTGATGATTCTTCTTGTAACAAACAAACATGGCGACCCCGATCTGCC
ACACACACACACAATCAGATGATTTTTTACCTTTCTCTTATCGACCTGACAATGGCGATG
ACTCCTGTGCTCGTTTCATCCTAGCGTGGAAAGAGAAACCATTGTGGGTGCACTTCTCGC
GCGAAAACTCGTCGCAAATTTTTCTGCTCTTTTATTTTTCTTTCCGTGTGTATGTTGGAG
CTCATAATGGATGGATATGGCGTGCGTATATTAGGATCAGTGTATGTGCGCGTATATAAC
ATAGCGTCCGTAT

Homology of Contig U35_5272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03580.1	348	3e-92	protein\|transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g02730.3	320	2e-121
Arabidopsis v10	None