barSeed - Barley Seed Development Database

Probe CUST_36786_PI390587928

Source Contig U35_13553

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36786_PI390587928	Hv_44K_v2	ACCGACTTGCTACGTAGCAAGTGTTACCTCTGTTTTTAAAATGTAAGACGTCTTATACTT	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59055.1	2774	7e-23	2667 - 2726	98	59 / 60	plus	ABC26011
MLOC	MLOC_59055.2	4324	7e-23	24 - 83	98	59 / 60	minus	ABC14290 ABC26011 ABC33107
Harvest21	ABC26011	590	3e-25	20 - 79	100	60 / 60	minus	ABC26011
Harvest35	U35_13553	590	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_13553 590 Hv_44K_v2
GCGCACAGATGCTCGACGTCACCATCAAGGACTGGCCCGTCGAGGACGCGCTGGGGTTCG
CCAAGCTCTCGCTCAAGTGCACGGAGATGCGGCGGAGGGACCGACCGGACCTCGGCACCG
TCGTACTGCCGGAGCTCAACCGGCTCAGAAACCTCGGCATCGCCTACGACCAGGCACGCG
CCACCGTCCCTGTTAGCGACAGCAGCTCGCACGGGCAGGAAAGGGTCAGCTCACCCACGG
TTGACGCGGGATCGTGGAGAACGGCGGAAAGCTAGCATTGGGCGCGCGCGCACACACACA
CAGGGTTGTCTGTATATTAGCTCTGTTTCAGATAGAGAGTGAGCTTAATTAATTACAAGA
GGAGAGGGGCATTATGAATGTCCACGTTCTTTTTGAGGTTAAAAATACATTACCTTGTGT
ATGTAGTTTCTCGCATGCTTGACATGTTTGCAGTGCTGGCTCATAATTTTGATTCACAAA
CTTTGTACATCCATCAGATGAGAATGTGTATACCGACTTGCTACGTAGCAAGTGTTACCT
CTGTTTTTAAAATGTAAGACGTCTTATACTTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None