barSeed - Barley Seed Development Database

Probe CUST_36777_PI390587928

Source Contig U35_25533

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36777_PI390587928	Hv_44K_v2	CAAGTGTAGCTTGTCTTCTTTTTATTTGCCATCTTATCGCATGTGTCTCACTGTCTTAAA	552	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252548.1	2382	7e-23	2326 - 2382	100	57 / 57	plus	ABC26388
JLOC1	JLOC1_9024.3	2147	1e-23	1954 - 2011	100	58 / 58	plus
JLOC1	JLOC1_9024.2	2290	1e-23	2097 - 2154	100	58 / 58	plus
JLOC1	JLOC1_9024.1	2459	1e-23	2266 - 2323	100	58 / 58	plus
Harvest21	ABC26388	626	3e-25	15 - 74	100	60 / 60	minus	ABC26388
Harvest35	U35_25533	626	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_25533 626 Hv_44K_v2
CAGGGCAAGCCGTCATCACCATTCGGTACAGCTGAGAGCTCATCGGGCTCACGGAATAGT
GACCCAGGTCGCAGCGGAAACCATTCTAGCAAGAAAGCGGCAGATAGGAAGAACGATTCT
GCGTGCATGAGCAACCCAGGGAAAGGGCCTATTAGGTGGCCTGTTCCTGTTGAAGATGCC
GCATCTCCTGTCAGACCCCCCGAGAAGGGCCTTATGCTTGATATGAGACAAAACCACGGC
AATGCCGCGAGGCATCCGATTCATGTATCGTCTCAGGCCCGGCTTGAGAAGGAATACGAA
AGCCAGCAGAAACTGAGGAAAGCAACGTTGGCCTCGTCTCTAGGATCAGGAGACTGGAAT
AAGGAGAGGAACAGGAGACTGTGAATTGTACATTATTCATGTTGAAAATCATAGAGGCTA
TATATTTGTCTGGGGATGGCATTGCGTAAACCAGGCAACTGTTTCATAAGAGGTAACAAC
ATAACATTGGGAGATGCGTTCATTTAGGTGGCGGATGTATTTATTGGGCATTTGTTGGTG
GAATTGGTGTAACAAGTGTAGCTTGTCTTCTTTTTATTTGCCATCTTATCGCATGTGTCT
CACTGTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25533 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16600.2	399	3e-55	protein\|expressed protein
Brachypodium v1_2	Bradi3g09830.1	671	2e-60
Arabidopsis v10	None