barSeed - Barley Seed Development Database

Probe CUST_36776_PI390587928

Source Contig U35_25534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36776_PI390587928	Hv_44K_v2	GCTATATGTTCCCATTTTGGGTATGTACTTATGATATAACTCACGAGTCTTTCAAACTCT	338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376462	2164	2e-24	2083 - 2142	100	60 / 60	plus	ABC26451
MLOC	MLOC_69929.1	2030	2e-24	1882 - 1941	100	60 / 60	plus	ABC26451
MLOC	MLOC_69929.2	2027	2e-24	1879 - 1938	100	60 / 60	plus	ABC26451
JLOC1	JLOC1_46367.2	1636	8e-25	1457 - 1516	100	60 / 60	plus
JLOC1	JLOC1_46367.1	1871	8e-25	1692 - 1751	100	60 / 60	plus
Harvest21	ABC26451	419	3e-25	339 - 398	100	60 / 60	plus	ABC26451
Harvest35	U35_25534	419	3e-25	339 - 398	100	60 / 60	plus

Contig Sequence (419 bp)

>U35_25534 419 Hv_44K_v2
GAGAGAACTAGTTGTGTCAGCTTCGACAGCCTTAGCCTCGAAGAAGCCAAGCTGAAGGAG
TTGCTTGGGCTGTACAACCGGCTGTGAAGTACCCCGTTCTCCAGCACTCTTGTGCTCTCT
GTCGCTTGAGGCTTGGAACTGCCAGACGTTACTGCCATAAACTAGCAGCCAAACATGAAG
GATCTGGCTGCTATTGTTCATTGGGATGTTGGCACCTGTTCCCGAATAATAGGCTTCTGT
TGGTCAGTTGCAAATTAGCATGCTTGAACTGAAGCGTCTTGCATGTTTACAACTTGTTAG
TATGGTATAGTCATATATTTGTTCAAAAATGGTATAGTGCTATATGTTCCCATTTTGGGT
ATGTACTTATGATATAACTCACGAGTCTTTCAAACTCTTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_25534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None