barSeed - Barley Seed Development Database

Probe CUST_36773_PI390587928

Source Contig U35_25537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36773_PI390587928	Hv_44K_v2	TTCGCCTTCTCCTTCTCCATCATCTCGGTGATGGCCGGCGTCACCACGACCTACAACGGG	242	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371349	1860	2e-24	177 - 236	100	60 / 60	plus	ABC11240 ABC17576 ABC18944
Harvest21	ABC25457	449	3e-25	243 - 302	100	60 / 60	plus
Harvest35	U35_25537	450	3e-25	243 - 302	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_25537 450 Hv_44K_v2
CCGGAGACCAGACCGACGAGCTCACTCGCTGGCAAACGAAGATAGGACGGCAACCTGCAG
CCAAGGCAGGGGCGGCGGCTGGGGAGGGGAGCTAGAGCTAGAGACGACCGATGGCCGTGT
CACGCTCCGGCGCGGCGGCCGTGTCCGCCGCCGGCGACACCACCGACGAGGCCGACCGAG
CGCGGCTGCACCAGCTCGGCTACAAGCAGGAGCTCAAGCGCGGCCTCTCCCTCATGTCCA
ACTTCGCCTTCTCCTTCTCCATCATCTCGGTGATGGCCGGCGTCACCACGACCTACAACG
GGGGGCTGCGCTACGGCGGACCGGCGTCCATGACGCTCGGGTGGCTGGTGGTGGCGGCGT
TCAACGGCTGCGTCGCTTTGTCCATGGCCGAGATCTGCTCGGCCTACCCGACCTCCGGCG
GGCTCTACTACTGGAGCGCCAAGCTCGCCG

Homology of Contig U35_25537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71760.1	509	2e-52	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi2g10510.1	519	3e-56
Arabidopsis v10	None