barSeed - Barley Seed Development Database

Probe CUST_3676_PI390587928

Source Contig U35_5274

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3676_PI390587928	Hv_44K_v2	TGGTCAGTGAAATGGGAAGTGTTCACCTCTTCTTATATTGCTTTGTATATGTTCAAACAT	1182	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.008	1.470	1.196	0.961	0.397	0.438
Raw	592.470	1344.964	960.469	1202.282	174.826	210.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249600.1	1138	2e-24	1053 - 1112	100	60 / 60	plus	ABC13158
MLOC	MLOC_19845.1	503	2e-24	163 - 222	100	60 / 60	plus	ABC13158
JLOC1	JLOC1_13756.1	302	8e-25	164 - 223	100	60 / 60	plus
Harvest21	ABC13158	1188	3e-25	1063 - 1122	100	60 / 60	plus	ABC13158
Harvest35	U35_5274	1308	3e-25	1183 - 1242	100	60 / 60	plus

Contig Sequence (1308 bp)

>U35_5274 1308 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAACCGCCTCCTCGGGGGCTCCCTGCGCCGGGTATCCAGT
TTATCAGGGTTTCTTTTAGAAATGTGCAGCAGCACACATCTTTACTCTTCCGCCGGAGTC
GGAGCCACGTCGCCGACGAGCCGACGCTGACGCACCTCCCACCTCGGCGACGCCGCCGCC
TCCCCAACTGCGCGCGTCTCCTATCCCGCGCTCGCTGTCCCCGCCCGCCGCGCAGACCAC
CACCAGCCCACCACCGGTCCAATTCGAGAAGGACCCCGAGCACAACGCCGCAGCCCGCGG
GACTCCGGATCGGCGACGGAATCCCGATCGATCGATTGGTTCGGCCGCTGGACTCAACAC
GCCTCCTCCATCCCGACACCTCACCCGCCGCACCCCCGTCTCCAAATAGAGCCAGGGGGA
TCCCTGCCCGCCTTGTTGGTCGTTGCTTACCGCGCTCGTCTTCGCAATGGGGGGCTCCTC
GGTGTGCGACGGGACTCTGTCTCTCGACGAGTTCAACGCCTCGGCGAAGGCGTTGGTCAC
CAAGTGGAGCGGGATCGATGTCGACAACGCCCTTCCCGACTGGGAGTGGAGGCCTTGCCG
CAAGATGGGGGTGCCATCTGAGACGGAGGGGTTTGTAGCCCTGGAAGGAGTGTACCGCAT
TGGCGCAGGAAGCCAGAGTGAGGAGAGCGATGACGACCCTGTCCCTGATGATGTTGTAGA
GCATGATACCTGGGTTCAGAGCTCCAGGGATAATGTTCACCTTTATGATTTCCATATTGT
CTACAGCTTTTCTTACAAGGTTCCGGTGCTATACTTTCAAGGTCTTCAGTCTGGTGGGCA
GCTGCTAACTTTAGATGAGATAAAAAAGGATCTTCCTTCTCATTCACTTCAGTTGTTAAA
CGAATCAAAGTGGACATTTATTACTCGAGAGGAGCATCCCCACCTAAGTAGGCCATGGTT
CACCTTGCATCCATGTGGAACCAGTGACTGGATGAAGTTGCTTCTTCATAAACTGGGAGA
CAAGGATCGATCTCTGCAATACTTGTCAGCATGGTTATCTGTGGTTGGTCAGGCAGTAGG
ATTGAAGATCCCGCTTAAGCTTTATTGCAATTCATAGGTCCACCCTCTTTCAGTATGTAG
TAGTACGTACCATTGTCATGTGGATGTTCCCGTCAGCAATGATGGTCAGTGAAATGGGAA
GTGTTCACCTCTTCTTATATTGCTTTGTATATGTTCAAACATTTCTCTCGATAACTTGAC
CATTTTGCAATGCAATAACTACTTTTATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5274 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g32210.1	223	1e-94	protein\|autophagy-related protein 10, putative, expressed
Brachypodium v1_2	Bradi1g72130.1	215	1e-104
Arabidopsis v10	None