barSeed - Barley Seed Development Database

Probe CUST_36769_PI390587928

Source Contig U35_37512

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36769_PI390587928	Hv_44K_v2	ACATTGGCAAGCTCGCAATGAAAGGCAGAAATCCACTGTAAAAGGAAAGCACGCAGTTGT	398	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.477	0.731	1.490	1.955	0.883	1.112
Raw	55.156	123.895	232.817	496.786	77.550	105.456

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC33221	662	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_37512	662	3e-25	399 - 458	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_37512 662 Hv_44K_v2
GAGAGAATCTAGTGCTACCCCAATGGCGCAAATCATCGACGGCAAGGCCATCGCCGCCGA
AATCAGGCGCGAGATCGCCGCCGAGGTCGCCGCGCTCTCATCCGCCCACAGCATCGTGCC
GGGGCTAGCGGTGGTGATCGTGGGGAGCAGGAAGGACTCGCAGACGTACGTGCAGATGAA
GCGCAAGGCCTGCGCCGAGGTCGGCATCCGCTCCTTCGACGTCGACCTCCCCGAGGACAT
CTCCGAGGCCGCGCTCGTCGCCGAGGTCCACCGCCTCAACGCCGACCCCGCCGTCCACGG
TATTCTTGTTCAGCTTCCATTGCCCAAGCATATCAACGAAGAAATTATATTAAACCAGAT
CTCCATTGAGAAAGATGTCGATGGTTTTCATCCTTTGAACATTGGCAAGCTCGCAATGAA
AGGCAGAAATCCACTGTAAAAGGAAAGCACGCAGTTGTGGTTGGGCGTAGCAACATCGTG
GGTTTACCAGTATCCCTTCTCCTTCTGAAAGCAGACGCTACCGTGTCGATCGTGCATTCA
CGGACGCCAAATCCCGAAACGATTGTCTGTCAAGCAGACATTGTCATTGCAGCAGCAGGC
CAGGCCATGATGATCAAGGGAGACTGGATCANACCAGGCGCGGCAGTCATCGATGTCGGT
AC

Homology of Contig U35_37512 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05830.1	293	2e-91	protein\|bifunctional protein folD, putative, expressed
Brachypodium v1_2	Bradi2g35690.1	293	1e-91
Arabidopsis v10	AT3G12290.1	299	1e-77	Amino acid dehydrogenase family protein \| chr3:3919591-3921326 FORWARD LENGTH=299