barSeed - Barley Seed Development Database

Probe CUST_3674_PI390587928

Source Contig U35_5276

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3674_PI390587928	Hv_44K_v2	TTGCCGGACTGTTGTATAGTGAATTTTATTCTGGTGTCAGATCGTTCCTCATCCAAAAAA	1288	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.713	2.790	1.336	0.776	0.149	0.187
Raw	362.530	938.407	381.308	375.610	23.076	32.176

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7404.1	1113	9e-22	44 - 98	100	55 / 55	minus	ABC17776
MLOC	MLOC_7404.2	2149	9e-22	44 - 98	100	55 / 55	minus	ABC17776
JLOC1	JLOC1_4878.1	2172	5e-22	2034 - 2088	100	55 / 55	plus
Harvest35	U35_5276	1359	3e-25	1289 - 1348	100	60 / 60	plus

Contig Sequence (1359 bp)

>U35_5276 1359 Hv_44K_v2
GCACGCTCCGGGAGCTCGACGACGCCACCGCCGGCTTCGCCCCCGACCGCGTCGTCGGCG
AGGGCGGCTACGGCATCGTCTACCTGGGCGTCTTCGCCGACGGCCGCCAGGTCGCCGTCA
AGAACCTCCTCAACAACAGGGGGCAGGCGGAGCGGGAGTTCACGGTGGAGGTGGAGGCGA
TCGGACGCGTCCGCCACAAGAACCTGGTCCGGCTGCTGGGCTACTGCGTCGAGGGAGCGC
ACCGGATCCTGGTGTACGAGTACGTCGACAATGGCAACCTCGAGCAGTGGCTTCACGGCG
ACGTCGGGCCCGTCAGCCCGCTCTCCTGGGACGCCCGGATGGACATCGTGCTCGGCACGG
CCAAAGGGATCACGTACCTGCACGAGGGGCTGGAGCCCAAGGTGGTGCACAGGGACATCA
AGTCGAGCAACATACTGCTGGACAAGCGGTGGAACTCCAAGGTCTCCGACTTCGGCCTCG
CCAAGCTCCTCGGCTCCGACAGCAACTACGTCACCACCAGGGTCATGGGAACGTTCGGTT
ACGTGGCGCCGGAATACGCGAGCACGGGCATGCTGAACGAGCGGAGCGACGTGTACAGCT
TCGGGGTCCTCATAATGGAGATCATCTCCGGCCGGTGCCCGGTCGACTACGCGAGGCCTC
CAGCCGAGGTTAACCTCGTGGAGTGGCTGAAGAAGATGGCGAGCAACAGGGACTACGAGG
CGGTTTTGGACCCGAAATTGCCGGAGAAGCCTACCTCCAAGGCCCTGAAGAAGGCGCTCC
TTGTCGCGCTGAGGTGCGTCGACCCCGACTCGCACAAACGGCCCAAGATGGGGCATGCCA
TCCATATGCTCGAGGTCGACGACTTCCCGTACCGAGAGGATCGTCGGACTATGCGGCCGT
GCCAAGGCAGCCCCCTGGAGAAATCAAGGGTTGTTCCCGGGAAGCCGGCGACGGAATCAG
GCCATAGCAGTTGCTACGATGGTAACACCAGCACCGCCGCCACTACGCCGTCCAGGTTCC
AGTAGGGCTAGTTCGCTCGCACGTCGTAGGTTTTTGCTTGCATGGTTGCTGCAACTCTGC
TGCGTTCAGTAAGCTCTAGGGAGCTTGGAAACGCGGTGCTGTAACTTGTTTTGGTCGGTG
TCGTTCTTCCTCTGGCTCTTCTGCCTCGTAAGTTTTGTGGAAGCCCTGCTTGATCTGTCG
AAAAGGTGTAGGTGAGCATATCCTCGATGAAAAGTTTCCCCCAGTTTGTCTGCTCTTCGT
AGGTGTTCCCCGCTGTGATTGACATAGCTTGCCGGACTGTTGTATAGTGAATTTTATTCT
GGTGTCAGATCGTTCCTCATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g36050.1	529	0.0	protein\|serine/threonine-protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g24197.1	521	0.0
Arabidopsis v10	AT1G01540.2	472	5e-161	Protein kinase superfamily protein \| chr1:195980-198383 FORWARD LENGTH=472